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README.md

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+---
+license: mit
+tags: [freezing-of-gait, parkinsons, accelerometer, self-supervised, mae, time-series]
+pipeline_tag: time-series-classification
+---
+
+# FORGE — FOG Representation via Generative Encoding
+
+Self-supervised spectral-temporal encoders for **Freezing of Gait (FOG)** detection from a
+single lower-back accelerometer. Pretrained by masked autoencoding on ~21M unlabeled home
+windows; evaluated zero-shot on the external FogAtHome cohort.
+
+**Headline:** the MC probe reaches clinical-grade agreement with expert video annotation —
+**ICC(%TF) = 0.909 [0.87, 0.94]**, zero-shot, one IMU.
+
+## Released weights
+
+### Pretrained FORGE encoders (the backbones)
+| Context | Window (frames) | File | Params |
+|---|---|---|---|
+| LC | 1000 | `encoders/lc.ckpt` | 14,147,072 |
+| MC | 500 | `encoders/mc.ckpt` | 14,147,072 |
+| SC | 200 | `encoders/sc.ckpt` | 12,918,272 |
+
+### Downstream classification checkpoints (128-patient DeFOG, 3-fold CV)
+| File | Context | Phase | Fold |
+|---|---|---|---|
+| `classification/lc_probe_fold0.ckpt` | lc | probe | 0 |
+| `classification/lc_probe_fold1.ckpt` | lc | probe | 1 |
+| `classification/lc_probe_fold2.ckpt` | lc | probe | 2 |
+| `classification/mc_probe_fold0.ckpt` | mc | probe | 0 |
+| `classification/mc_probe_fold1.ckpt` | mc | probe | 1 |
+| `classification/mc_probe_fold2.ckpt` | mc | probe | 2 |
+| `classification/sc_probe_fold0.ckpt` | sc | probe | 0 |
+| `classification/sc_probe_fold1.ckpt` | sc | probe | 1 |
+| `classification/sc_probe_fold2.ckpt` | sc | probe | 2 |
+| `classification/lc_finetune_fold0.ckpt` | lc | finetune | 0 |
+| `classification/lc_finetune_fold1.ckpt` | lc | finetune | 1 |
+| `classification/lc_finetune_fold2.ckpt` | lc | finetune | 2 |
+| `classification/mc_finetune_fold0.ckpt` | mc | finetune | 0 |
+| `classification/mc_finetune_fold1.ckpt` | mc | finetune | 1 |
+| `classification/mc_finetune_fold2.ckpt` | mc | finetune | 2 |
+| `classification/sc_finetune_fold0.ckpt` | sc | finetune | 0 |
+| `classification/sc_finetune_fold1.ckpt` | sc | finetune | 1 |
+| `classification/sc_finetune_fold2.ckpt` | sc | finetune | 2 |
+| `classification/lc_supervised_fold0.ckpt` | lc | supervised | 0 |
+| `classification/lc_supervised_fold1.ckpt` | lc | supervised | 1 |
+| `classification/lc_supervised_fold2.ckpt` | lc | supervised | 2 |
+| `classification/mc_supervised_fold0.ckpt` | mc | supervised | 0 |
+| `classification/mc_supervised_fold1.ckpt` | mc | supervised | 1 |
+| `classification/mc_supervised_fold2.ckpt` | mc | supervised | 2 |
+| `classification/sc_supervised_fold0.ckpt` | sc | supervised | 0 |
+| `classification/sc_supervised_fold1.ckpt` | sc | supervised | 1 |
+| `classification/sc_supervised_fold2.ckpt` | sc | supervised | 2 |
+
+## Usage
+Checkpoints are slimmed PyTorch Lightning checkpoints (weights + config; optimizer state
+stripped). Each keeps the `state_dict` and the `hyper_parameters["config"]` Pydantic config
+used to rebuild the model — the same fields the evaluation pipeline reads.
+
+```python
+import torch
+ckpt = torch.load("encoders/mc.ckpt", map_location="cpu", weights_only=False)
+state_dict = ckpt["state_dict"]            # encoder weights
+config = ckpt["hyper_parameters"]["config"]  # Config object to rebuild the model
+meta = ckpt.get("forge_meta")              # name / context / phase / fold
+```
+
+Reproduce every paper number with the companion repo's `reproduce-evaluations` skill (see
+`manifest.yaml`, shipped in this repo).
+Data: [Liornis/fog-dataset](https://huggingface.co/datasets/Liornis/fog-dataset).
+
+License: **MIT**.

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manifest.yaml

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+meta:
+  paper: FORGE (draft v0.3)
+  headline_model: mc_probe_all128_ensemble
+  threshold_protocol: defog_val_pr11
+  license: MIT
+  hf_weights_repo: Liornis/forge-fog
+  hf_dataset_repo: Liornis/fog-dataset
+encoders:
+  lc:
+    name: encoder_lc_mae
+    hf_path: encoders/lc.ckpt
+    local: checkpoints/mae/sleek-monkey-199/last.ckpt
+    window_frames: 1000
+    vit_depth: 4
+    params: 14147072
+    role: FORGE backbone (long context, 10s)
+  mc:
+    name: encoder_mc_mae
+    hf_path: encoders/mc.ckpt
+    local: checkpoints/mae/mae_medcontext_daily/mae_medcontext_daily/last.ckpt
+    window_frames: 500
+    vit_depth: 4
+    params: 14147072
+    role: FORGE backbone (medium context, 5s)
+  sc:
+    name: encoder_sc_mae
+    hf_path: encoders/sc.ckpt
+    local: checkpoints/mae/mae_shortcontext_vit4_daily/mae_shortcontext_vit4_daily/last.ckpt
+    window_frames: 200
+    vit_depth: 4
+    params: 12918272
+    role: FORGE backbone (short context, 2s)
+classification:
+- name: lc_probe_all128_fold0
+  context: lc
+  phase: probe
+  fold: 0
+  hf_path: classification/lc_probe_fold0.ckpt
+  local: checkpoints/classification/soft_probe_lc_all128_fold0/last.ckpt
+  config: classification/spectral_patch_mae_lc_valid_defog_soft
+  headline: false
+- name: lc_probe_all128_fold1
+  context: lc
+  phase: probe
+  fold: 1
+  hf_path: classification/lc_probe_fold1.ckpt
+  local: checkpoints/classification/soft_probe_lc_all128_fold1/last.ckpt
+  config: classification/spectral_patch_mae_lc_valid_defog_soft
+  headline: false
+- name: lc_probe_all128_fold2
+  context: lc
+  phase: probe
+  fold: 2
+  hf_path: classification/lc_probe_fold2.ckpt
+  local: checkpoints/classification/soft_probe_lc_all128_fold2/last.ckpt
+  config: classification/spectral_patch_mae_lc_valid_defog_soft
+  headline: false
+- name: mc_probe_all128_fold0
+  context: mc
+  phase: probe
+  fold: 0
+  hf_path: classification/mc_probe_fold0.ckpt
+  local: checkpoints/classification/soft_probe_mc_all128_fold0/last.ckpt
+  config: classification/spectral_patch_mae_mc_valid_defog_soft
+  headline: true
+- name: mc_probe_all128_fold1
+  context: mc
+  phase: probe
+  fold: 1
+  hf_path: classification/mc_probe_fold1.ckpt
+  local: checkpoints/classification/soft_probe_mc_all128_fold1/last.ckpt
+  config: classification/spectral_patch_mae_mc_valid_defog_soft
+  headline: true
+- name: mc_probe_all128_fold2
+  context: mc
+  phase: probe
+  fold: 2
+  hf_path: classification/mc_probe_fold2.ckpt
+  local: checkpoints/classification/soft_probe_mc_all128_fold2/last.ckpt
+  config: classification/spectral_patch_mae_mc_valid_defog_soft
+  headline: true
+- name: sc_probe_all128_fold0
+  context: sc
+  phase: probe
+  fold: 0
+  hf_path: classification/sc_probe_fold0.ckpt
+  local: checkpoints/classification/soft_probe_sc_all128_fold0/last.ckpt
+  config: classification/spectral_patch_mae_sc_valid_defog_soft
+  headline: false
+- name: sc_probe_all128_fold1
+  context: sc
+  phase: probe
+  fold: 1
+  hf_path: classification/sc_probe_fold1.ckpt
+  local: checkpoints/classification/soft_probe_sc_all128_fold1/last.ckpt
+  config: classification/spectral_patch_mae_sc_valid_defog_soft
+  headline: false
+- name: sc_probe_all128_fold2
+  context: sc
+  phase: probe
+  fold: 2
+  hf_path: classification/sc_probe_fold2.ckpt
+  local: checkpoints/classification/soft_probe_sc_all128_fold2/last.ckpt
+  config: classification/spectral_patch_mae_sc_valid_defog_soft
+  headline: false
+- name: lc_finetune_all128_fold0
+  context: lc
+  phase: finetune
+  fold: 0
+  hf_path: classification/lc_finetune_fold0.ckpt
+  local: checkpoints/classification/soft_finetune_lc_all128_fold0/last.ckpt
+  config: classification/spectral_patch_mae_lc_valid_defog_soft
+  headline: false
+- name: lc_finetune_all128_fold1
+  context: lc
+  phase: finetune
+  fold: 1
+  hf_path: classification/lc_finetune_fold1.ckpt
+  local: checkpoints/classification/soft_finetune_lc_all128_fold1/last.ckpt
+  config: classification/spectral_patch_mae_lc_valid_defog_soft
+  headline: false
+- name: lc_finetune_all128_fold2
+  context: lc
+  phase: finetune
+  fold: 2
+  hf_path: classification/lc_finetune_fold2.ckpt
+  local: checkpoints/classification/soft_finetune_lc_all128_fold2/last.ckpt
+  config: classification/spectral_patch_mae_lc_valid_defog_soft
+  headline: false
+- name: mc_finetune_all128_fold0
+  context: mc
+  phase: finetune
+  fold: 0
+  hf_path: classification/mc_finetune_fold0.ckpt
+  local: checkpoints/classification/soft_finetune_mc_all128_fold0/last.ckpt
+  config: classification/spectral_patch_mae_mc_valid_defog_soft
+  headline: false
+- name: mc_finetune_all128_fold1
+  context: mc
+  phase: finetune
+  fold: 1
+  hf_path: classification/mc_finetune_fold1.ckpt
+  local: checkpoints/classification/soft_finetune_mc_all128_fold1/last.ckpt
+  config: classification/spectral_patch_mae_mc_valid_defog_soft
+  headline: false
+- name: mc_finetune_all128_fold2
+  context: mc
+  phase: finetune
+  fold: 2
+  hf_path: classification/mc_finetune_fold2.ckpt
+  local: checkpoints/classification/soft_finetune_mc_all128_fold2/last.ckpt
+  config: classification/spectral_patch_mae_mc_valid_defog_soft
+  headline: false
+- name: sc_finetune_all128_fold0
+  context: sc
+  phase: finetune
+  fold: 0
+  hf_path: classification/sc_finetune_fold0.ckpt
+  local: checkpoints/classification/soft_finetune_sc_all128_fold0/last.ckpt
+  config: classification/spectral_patch_mae_sc_valid_defog_soft
+  headline: false
+- name: sc_finetune_all128_fold1
+  context: sc
+  phase: finetune
+  fold: 1
+  hf_path: classification/sc_finetune_fold1.ckpt
+  local: checkpoints/classification/soft_finetune_sc_all128_fold1/last.ckpt
+  config: classification/spectral_patch_mae_sc_valid_defog_soft
+  headline: false
+- name: sc_finetune_all128_fold2
+  context: sc
+  phase: finetune
+  fold: 2
+  hf_path: classification/sc_finetune_fold2.ckpt
+  local: checkpoints/classification/soft_finetune_sc_all128_fold2/last.ckpt
+  config: classification/spectral_patch_mae_sc_valid_defog_soft
+  headline: false
+- name: lc_supervised_all128_fold0
+  context: lc
+  phase: supervised
+  fold: 0
+  hf_path: classification/lc_supervised_fold0.ckpt
+  local: checkpoints/classification/soft_supervised_lc_all128_fold0/last.ckpt
+  config: classification/spectral_patch_mae_lc_valid_defog_soft
+  headline: false
+- name: lc_supervised_all128_fold1
+  context: lc
+  phase: supervised
+  fold: 1
+  hf_path: classification/lc_supervised_fold1.ckpt
+  local: checkpoints/classification/soft_supervised_lc_all128_fold1/last.ckpt
+  config: classification/spectral_patch_mae_lc_valid_defog_soft
+  headline: false
+- name: lc_supervised_all128_fold2
+  context: lc
+  phase: supervised
+  fold: 2
+  hf_path: classification/lc_supervised_fold2.ckpt
+  local: checkpoints/classification/soft_supervised_lc_all128_fold2/last.ckpt
+  config: classification/spectral_patch_mae_lc_valid_defog_soft
+  headline: false
+- name: mc_supervised_all128_fold0
+  context: mc
+  phase: supervised
+  fold: 0
+  hf_path: classification/mc_supervised_fold0.ckpt
+  local: checkpoints/classification/soft_supervised_mc_all128_fold0/last.ckpt
+  config: classification/spectral_patch_mae_mc_valid_defog_soft
+  headline: false
+- name: mc_supervised_all128_fold1
+  context: mc
+  phase: supervised
+  fold: 1
+  hf_path: classification/mc_supervised_fold1.ckpt
+  local: checkpoints/classification/soft_supervised_mc_all128_fold1/last.ckpt
+  config: classification/spectral_patch_mae_mc_valid_defog_soft
+  headline: false
+- name: mc_supervised_all128_fold2
+  context: mc
+  phase: supervised
+  fold: 2
+  hf_path: classification/mc_supervised_fold2.ckpt
+  local: checkpoints/classification/soft_supervised_mc_all128_fold2/last.ckpt
+  config: classification/spectral_patch_mae_mc_valid_defog_soft
+  headline: false
+- name: sc_supervised_all128_fold0
+  context: sc
+  phase: supervised
+  fold: 0
+  hf_path: classification/sc_supervised_fold0.ckpt
+  local: checkpoints/classification/soft_supervised_sc_all128_fold0/last.ckpt
+  config: classification/spectral_patch_mae_sc_valid_defog_soft
+  headline: false
+- name: sc_supervised_all128_fold1
+  context: sc
+  phase: supervised
+  fold: 1
+  hf_path: classification/sc_supervised_fold1.ckpt
+  local: checkpoints/classification/soft_supervised_sc_all128_fold1/last.ckpt
+  config: classification/spectral_patch_mae_sc_valid_defog_soft
+  headline: false
+- name: sc_supervised_all128_fold2
+  context: sc
+  phase: supervised
+  fold: 2
+  hf_path: classification/sc_supervised_fold2.ckpt
+  local: checkpoints/classification/soft_supervised_sc_all128_fold2/last.ckpt
+  config: classification/spectral_patch_mae_sc_valid_defog_soft
+  headline: false
+datasets:
+  fogathome:
+    hf_subdir: fogathome
+    role: external_structured
+    prevalence: 0.313
+    n_patients: 12
+  dailyliving:
+    hf_subdir: fogathome_dailyliving
+    role: external_naturalistic
+    prevalence: 0.011
+    n_patients: 11
+  kaggle:
+    hf_subdir: kaggle_labeled
+    role: in_distribution
+results:
+- id: fogathome_icc_tf
+  model: mc_probe_all128_ensemble
+  value: 0.909
+  ci:
+  - 0.87
+  - 0.94
+  figure: fig01
+  script: source .venv/bin/activate && python scripts/eval/compute_icc_thresholds.py
+    --suffix _all128 --out logs/RESULTS_all128_icc.md
+- id: fogathome_seg_auc
+  model: mc_probe_all128_ensemble
+  value: 0.908
+  script: source .venv/bin/activate && python scripts/eval/eval_comprehensive.py --datasets
+    fogathome --contexts mc --models probe_all128 --output logs/comprehensive_eval_all128.csv
+    --cache-dir logs/comprehensive_eval_cache
+- id: fogathome_cls_ap
+  model: mc_probe_all128_ensemble
+  value: 0.823