# AIVIN h5ad Audit Report

**Generated**: 2026-05-25T23:53:29.045338+00:00

**Files audited**: 40

**Pass**: 22 / 40

**View-only**: 3 / 40


## Per-file summary

| File | Pass | Shape | X state | uns OK | view-only | Notes |
|---|---|---|---|---|---|---|
| `sc__cld-lyec__tamburini2019-4pts__901cx11302g__GSE129933.h5ad` | ✓ | 901×11302 | raw_counts | 0/9 |  | no patient/donor obs column found (Patient/patient_id/donor/subject); uns missing required |
| `sc__hcc-cd45-ss2__sharma2020-ss2-6pts__7074cx54574g__GSE140228-ss2.h5ad` | ✓ | 7074×54574 | unknown | 0/9 | 👁 | no patient/donor obs column found (Patient/patient_id/donor/subject); X state unknown — re |
| `sc__hcc-cd45__guo2025-9pts__191435cx28671g__GSE235863-9pt.h5ad` | ✓ | 191435×28671 | raw_counts | 12/9 |  |  |
| `sc__hcc-cd8tcell__guo2025-5pts__95408cx26256g__GSE235863-5pt.h5ad` | ✓ | 95408×26256 | raw_counts | 12/9 |  |  |
| `sc__hcc-fetal__sharma2020-62pts__109238cx2384g__GSE156625-HCCF.h5ad` | ✓ | 109238×2384 | scaled_HVG | 13/9 | 👁 |  |
| `sc__hcc-iccA-cd45__sharma2020-droplet-5pts__66187cx54574g__GSE140228-droplet.h5ad` | ✓ | 66187×54574 | raw_counts | 0/9 |  | no patient/donor obs column found (Patient/patient_id/donor/subject); uns missing required |
| `sc__hcc-iccA-mixed__ma2019-set1-12pts__5115cx20124g__GSE125449-set1.h5ad` | ✓ | 5115×20124 | raw_counts | 0/9 |  | uns missing required keys: ['cohort_tag', 'ingest_date', 'ingested_by', 'modality', 'sourc |
| `sc__hcc-iccA-mixed__ma2019-set2-7pts__4831cx19572g__GSE125449-set2.h5ad` | ✓ | 4831×19572 | raw_counts | 0/9 |  | uns missing required keys: ['cohort_tag', 'ingest_date', 'ingested_by', 'modality', 'sourc |
| `sc__hcc-iccA-treated__ma2021-46pts__56721cx18667g__GSE151530.h5ad` | ✓ | 56721×18667 | raw_counts | 0/9 |  | no patient/donor obs column found (Patient/patient_id/donor/subject); uns missing required |
| `sc__hcc-mash-spectrum__huang2025-4pts__34396cx32285g__GSE282630.h5ad` | ✓ | 34396×32285 | raw_counts | 10/9 |  | no patient/donor obs column found (Patient/patient_id/donor/subject); uns missing required |
| `sc__hcc-multisite__lu2022-10pts__71915cx25712g__GSE149614.h5ad` | ✓ | 71915×25712 | raw_counts | 0/9 |  | uns missing required keys: ['cohort_tag', 'ingest_date', 'ingested_by', 'modality', 'sourc |
| `sc__hcc-trm__park2025-7pts__41848cx36601g__GSE281110.h5ad` | ✓ | 41848×36601 | raw_counts | 10/9 |  | patient count mismatch: filename=7, obs.patient=6; uns missing required keys: ['x_state'] |
| `sc__hcc-tumor-normal__sharma2020-58pts__73589cx2608g__GSE156625-HCC.h5ad` | ✓ | 73589×2608 | scaled_HVG | 13/9 | 👁 |  |
| `sc__healthy-nat__liver__13083cx33694g__GSM4648565.h5ad` | ✗ | ?×? | ? | 0/9 |  | filename does not match AIVIN convention: sc__healthy-nat__liver__13083cx33694g__GSM464856 |
| `sc__healthy__b-cell__1250cx32596g__6ade4ff5-368c-4276-b051-818dc954da6d.h5ad` | ✗ | ?×? | ? | 0/9 |  | filename does not match AIVIN convention: sc__healthy__b-cell__1250cx32596g__6ade4ff5-368c |
| `sc__healthy__cholangiocyte__1011cx32596g__601ef580-74ce-4a87-96e8-8e22bf4ed9fa.h5ad` | ✗ | ?×? | ? | 0/9 |  | filename does not match AIVIN convention: sc__healthy__cholangiocyte__1011cx32596g__601ef5 |
| `sc__healthy__endothelial__9422cx32596g__a95e1659-9a48-4c55-8062-621ee4df9160.h5ad` | ✗ | ?×? | ? | 0/9 |  | filename does not match AIVIN convention: sc__healthy__endothelial__9422cx32596g__a95e1659 |
| `sc__healthy__hepatocyte-v1__53015cx32596g__63137dcf-6236-464d-9018-e58c9323f59c.h5ad` | ✗ | ?×? | ? | 0/9 |  | filename does not match AIVIN convention: sc__healthy__hepatocyte-v1__53015cx32596g__63137 |
| `sc__healthy__hepatocyte-v2__13635cx32596g__6b241dde-25c0-4edc-9021-03603ec3a524.h5ad` | ✗ | ?×? | ? | 0/9 |  | filename does not match AIVIN convention: sc__healthy__hepatocyte-v2__13635cx32596g__6b241 |
| `sc__healthy__lymphoid__16665cx32596g__9bc7506b-7e73-4cea-bbb3-3603a016fbca.h5ad` | ✗ | ?×? | ? | 0/9 |  | filename does not match AIVIN convention: sc__healthy__lymphoid__16665cx32596g__9bc7506b-7 |
| `sc__healthy__macrophage__11127cx32596g__2cfec927-9163-4684-ae04-c15175a6d781.h5ad` | ✗ | ?×? | ? | 0/9 |  | filename does not match AIVIN convention: sc__healthy__macrophage__11127cx32596g__2cfec927 |
| `sc__healthy__stellate__1417cx32596g__08a9f031-1e76-405a-8050-0635743ce187.h5ad` | ✗ | ?×? | ? | 0/9 |  | filename does not match AIVIN convention: sc__healthy__stellate__1417cx32596g__08a9f031-1e |
| `sc__psc-pbc-healthy__all-cells__89637cx32596g__7d4d0da4-655e-438a-a2ec-b4371e2b80fc.h5ad` | ✗ | ?×? | ? | 0/9 |  | filename does not match AIVIN convention: sc__psc-pbc-healthy__all-cells__89637cx32596g__7 |
| `sn__hcc-tumor-normal__alvarez2022-1pts__39995cx58100g__GSE189175.h5ad` | ✓ | 39995×58100 | raw_counts | 10/9 |  | var_names not unique: 1748 duplicates; patient count mismatch: filename=1, obs.Patient=3;  |
| `sn__hcc-tumor-normal__alvarez2022-3pts__39995cx58100g__GSE189175.h5ad` | ✓ | 39995×58100 | raw_counts | 13/9 |  |  |
| `sn__psc-pbc-healthy__all-cells__105780cx32596g__4b5895d7-6d92-471a-b13a-5c59a000ddc4.h5ad` | ✗ | ?×? | ? | 0/9 |  | filename does not match AIVIN convention: sn__psc-pbc-healthy__all-cells__105780cx32596g__ |
| `visium__hcc-antiPD1__liu2025-1pts__1320cx36601g__GSE238264-HCC5NR.h5ad` | ✓ | 1320×36601 | raw_counts | 10/9 |  | no patient/donor obs column found (Patient/patient_id/donor/subject); uns missing required |
| `visium__hcc-antiPD1__liu2025-1pts__2170cx36601g__GSE238264-HCC3R.h5ad` | ✓ | 2170×36601 | raw_counts | 10/9 |  | no patient/donor obs column found (Patient/patient_id/donor/subject); uns missing required |
| `visium__hcc-antiPD1__liu2025-1pts__2453cx36601g__GSE238264-HCC7NR.h5ad` | ✓ | 2453×36601 | raw_counts | 10/9 |  | no patient/donor obs column found (Patient/patient_id/donor/subject); uns missing required |
| `visium__hcc-antiPD1__liu2025-1pts__2575cx36601g__GSE238264-HCC6NR.h5ad` | ✓ | 2575×36601 | raw_counts | 10/9 |  | no patient/donor obs column found (Patient/patient_id/donor/subject); uns missing required |
| `visium__hcc-antiPD1__liu2025-1pts__2766cx36601g__GSE238264-HCC2R.h5ad` | ✓ | 2766×36601 | raw_counts | 10/9 |  | no patient/donor obs column found (Patient/patient_id/donor/subject); uns missing required |
| `visium__hcc-antiPD1__liu2025-1pts__3002cx36601g__GSE238264-HCC4R.h5ad` | ✓ | 3002×36601 | raw_counts | 10/9 |  | no patient/donor obs column found (Patient/patient_id/donor/subject); uns missing required |
| `visium__hcc-antiPD1__liu2025-1pts__3006cx36601g__GSE238264-HCC1R.h5ad` | ✓ | 3006×36601 | raw_counts | 10/9 |  | no patient/donor obs column found (Patient/patient_id/donor/subject); uns missing required |
| `visium__healthy-C73__blockA1__4992sx35477g__9c731db0-9f44-4f8c-8139-9b9af2bcc782.h5ad` | ✗ | ?×? | ? | 0/9 |  | filename does not match AIVIN convention: visium__healthy-C73__blockA1__4992sx35477g__9c73 |
| `visium__healthy-C73__blockC1__4992sx35477g__b2287ef1-eac3-49cc-93de-65df74e26a61.h5ad` | ✗ | ?×? | ? | 0/9 |  | filename does not match AIVIN convention: visium__healthy-C73__blockC1__4992sx35477g__b228 |
| `visium__healthy-C73__blockD1__4992sx35477g__44453de7-1d66-4bd1-a83d-0b73a1690d57.h5ad` | ✗ | ?×? | ? | 0/9 |  | filename does not match AIVIN convention: visium__healthy-C73__blockD1__4992sx35477g__4445 |
| `visium__psc-PSC011__blockA1__4992sx35477g__7bc39166-b664-4c92-922d-f9a8047768d2.h5ad` | ✗ | ?×? | ? | 0/9 |  | filename does not match AIVIN convention: visium__psc-PSC011__blockA1__4992sx35477g__7bc39 |
| `visium__psc-PSC011__blockB1__4992sx35477g__6da751d4-63af-43b8-96db-395ca73dfb5f.h5ad` | ✗ | ?×? | ? | 0/9 |  | filename does not match AIVIN convention: visium__psc-PSC011__blockB1__4992sx35477g__6da75 |
| `visium__psc-PSC011__blockC1__4992sx35477g__0cc59004-2b35-4767-8278-83e097ef32d1.h5ad` | ✗ | ?×? | ? | 0/9 |  | filename does not match AIVIN convention: visium__psc-PSC011__blockC1__4992sx35477g__0cc59 |
| `visium__psc-PSC011__blockD1__4992sx35477g__721bfc1c-f77f-4c5a-afc6-04e3e3c675d3.h5ad` | ✗ | ?×? | ? | 0/9 |  | filename does not match AIVIN convention: visium__psc-PSC011__blockD1__4992sx35477g__721bf |