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manifests/uniprot_fot_build_manifest.json

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+{
+  "format_version": "uniprot_fot_graphified_v0",
+  "raw_manifest": {
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+        "path": "data/uniprot_fot/raw_sources/dna_coding_regions_train",
+        "mode": "symlink",
+        "source": "/home/iska/Documents/amelie/bio/iska-net/data/raw_hf_bio_scale/dna_coding_regions_train"
+      },
+      {
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+        "path": "data/uniprot_fot/raw_sources/pubchem10m_selfies_train",
+        "mode": "symlink",
+        "source": "/home/iska/Documents/amelie/bio/iska-net/data/raw_hf_bio_scale/pubchem10m_selfies_train"
+      },
+      {
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+        "path": "data/uniprot_fot/raw_sources/rfam_sequence_train",
+        "mode": "symlink",
+        "source": "/home/iska/Documents/amelie/bio/iska-net/data/raw_hf_bio_scale/rfam_sequence_train"
+      },
+      {
+        "dataset": "rnacentral_8192_sequence_train",
+        "path": "data/uniprot_fot/raw_sources/rnacentral_8192_sequence_train",
+        "mode": "symlink",
+        "source": "/home/iska/Documents/amelie/bio/iska-net/data/raw_hf_bio_scale/rnacentral_8192_sequence_train"
+      },
+      {
+        "dataset": "uniprot_function_text_train",
+        "path": "data/uniprot_fot/raw_sources/uniprot_function_text_train",
+        "mode": "symlink",
+        "source": "/home/iska/Documents/amelie/bio/iska-net/data/raw_hf_bio_scale/uniprot_function_text_train"
+      },
+      {
+        "dataset": "uniprot_uniref50_sequence_train",
+        "path": "data/uniprot_fot/raw_sources/uniprot_uniref50_sequence_train",
+        "mode": "symlink",
+        "source": "/home/iska/Documents/amelie/bio/iska-net/data/raw_hf_bio_scale/uniprot_uniref50_sequence_train"
+      }
+    ]
+  },
+  "derived": {
+    "jsonl": "data/uniprot_fot/derived/uniprot_fot_graphified_sample.jsonl",
+    "parquet": "data/uniprot_fot/derived/uniprot_fot_graphified_sample.parquet",
+    "records": 48,
+    "sample_per_dataset": 8,
+    "counts_by_dataset": {
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+      "pubchem10m_selfies_train": 8,
+      "rfam_sequence_train": 8,
+      "rnacentral_8192_sequence_train": 8,
+      "uniprot_function_text_train": 8,
+      "uniprot_uniref50_sequence_train": 8
+    },
+    "schema": [
+      {
+        "name": "record_id",
+        "type": "string"
+      },
+      {
+        "name": "dataset",
+        "type": "string"
+      },
+      {
+        "name": "source_file",
+        "type": "string"
+      },
+      {
+        "name": "source_row_index",
+        "type": "int64"
+      },
+      {
+        "name": "entry_id",
+        "type": "string"
+      },
+      {
+        "name": "task_family",
+        "type": "string"
+      },
+      {
+        "name": "sequence",
+        "type": "large_string"
+      },
+      {
+        "name": "annotation_text",
+        "type": "large_string"
+      },
+      {
+        "name": "text",
+        "type": "large_string"
+      },
+      {
+        "name": "graph_json",
+        "type": "large_string"
+      },
+      {
+        "name": "forest_json",
+        "type": "large_string"
+      },
+      {
+        "name": "metadata_json",
+        "type": "large_string"
+      },
+      {
+        "name": "content_hash",
+        "type": "string"
+      },
+      {
+        "name": "group_hash",
+        "type": "string"
+      },
+      {
+        "name": "split",
+        "type": "string"
+      },
+      {
+        "name": "split_cluster",
+        "type": "string"
+      },
+      {
+        "name": "quality_flags_json",
+        "type": "string"
+      }
+    ]
+  },
+  "notes": [
+    "This is a deterministic graphification sample, not the final authored reasoning corpus.",
+    "Raw sources are symlinked by default to avoid duplicating 26GB on a nearly full filesystem.",
+    "Use --raw-link-mode move only after confirming no other workflow depends on the old raw path."
+  ]
+}