Create data/test.csv

data/test.csv

@@ -0,0 +1,11 @@
+row_id,series_id,timepoint_h,organism,strain_id,drug_name,target_gene,mutation_id,mutant_frac_target_mod,mic_drug_mg_L,resistant_mic_cutoff_mg_L,media,assay_method,source_type,penetration_signal,earliest_penetration,notes
+ABXRM005-TE-0001,S4,0,Escherichia coli,EC-CLIN901,ciprofloxacin,gyrA,gyrA_S83L,0.00,0.25,1.00,CAMHB,amplicon_seq,simulated,0,0,baseline
+ABXRM005-TE-0002,S4,12,Escherichia coli,EC-CLIN901,ciprofloxacin,gyrA,gyrA_S83L,0.06,0.25,1.00,CAMHB,amplicon_seq,simulated,0,0,low level
+ABXRM005-TE-0003,S4,24,Escherichia coli,EC-CLIN901,ciprofloxacin,gyrA,gyrA_S83L,0.28,0.50,1.00,CAMHB,amplicon_seq,simulated,1,1,penetration before phenotype
+ABXRM005-TE-0004,S4,48,Escherichia coli,EC-CLIN901,ciprofloxacin,gyrA,gyrA_S83L,0.62,2.00,1.00,CAMHB,amplicon_seq,simulated,1,0,phenotype later
+ABXRM005-TE-0005,S5,0,Staphylococcus aureus,SA-CLIN777,rifampicin,rpoB,rpoB_S531L,0.30,2.00,1.00,CAMHB,amplicon_seq,simulated,0,0,MIC already resistant
+ABXRM005-TE-0006,S5,24,Staphylococcus aureus,SA-CLIN777,rifampicin,rpoB,rpoB_S531L,0.40,4.00,1.00,CAMHB,amplicon_seq,simulated,0,0,not early signal
+ABXRM005-TE-0007,S6,0,Streptococcus pneumoniae,SP-CLIN600,penicillin,pbp2x,pbp2x_T338A,0.00,0.06,2.00,CAMHB,amplicon_seq,simulated,0,0,baseline
+ABXRM005-TE-0008,S6,12,Streptococcus pneumoniae,SP-CLIN600,penicillin,pbp2x,pbp2x_T338A,0.90,0.06,2.00,CAMHB,amplicon_seq,simulated,0,0,spike candidate
+ABXRM005-TE-0009,S6,24,Streptococcus pneumoniae,SP-CLIN600,penicillin,pbp2x,pbp2x_T338A,0.01,0.06,2.00,CAMHB,amplicon_seq,simulated,0,0,snapback artifact
+ABXRM005-TE-0010,S7,0,Klebsiella pneumoniae,KP-CLIN333,cefepime,ftsI,ftsI_mutA,0.10,1.00,8.00,CAMHB,amplicon_seq,simulated,0,0,small rise no event