import csv import json from collections import Counter VALID_LABELS = {"0", "1", "2"} POP_MAP = {"none": 0, "minor": 1, "major": 2} DEV_MAP = {"low": 0, "medium": 1, "high": 2} SITE_MAP = {"low": 0, "medium": 1, "high": 2} FRAG_MAP = {"low": 0, "medium": 1, "high": 2} REQUIRED_GOLD_COLS = [ "id", "population_shift", "protocol_deviation_rate", "site_variance_level", "endpoint_fragility", "label", ] def _norm(x) -> str: return str(x).strip().lower() def _map_val(x, m, name: str) -> int: s = _norm(x) if s not in m: raise ValueError(f"Bad {name} value: {x}") return m[s] def _validate_gold_row(r: dict): for c in REQUIRED_GOLD_COLS: if c not in r: raise ValueError(f"Missing column: {c}") lab = str(r["label"]).strip() if lab not in VALID_LABELS: raise ValueError(f"Bad label: {r['label']}") _map_val(r["population_shift"], POP_MAP, "population_shift") _map_val(r["protocol_deviation_rate"], DEV_MAP, "protocol_deviation_rate") _map_val(r["site_variance_level"], SITE_MAP, "site_variance_level") _map_val(r["endpoint_fragility"], FRAG_MAP, "endpoint_fragility") def _extract_pred_label(pred_row: dict) -> str: v = pred_row.get("label") or pred_row.get("prediction") or pred_row.get("output") or "" s = str(v).strip() if s in VALID_LABELS: return s # allow JSON {"label":"2"} if s.startswith("{") and s.endswith("}"): try: obj = json.loads(s) if isinstance(obj, dict) and "label" in obj: lab = str(obj["label"]).strip() if lab in VALID_LABELS: return lab except Exception: pass return "invalid" def _rule_pred(g: dict) -> str: pop = _map_val(g["population_shift"], POP_MAP, "population_shift") dev = _map_val(g["protocol_deviation_rate"], DEV_MAP, "protocol_deviation_rate") site = _map_val(g["site_variance_level"], SITE_MAP, "site_variance_level") frag = _map_val(g["endpoint_fragility"], FRAG_MAP, "endpoint_fragility") # collapse when fragility is high plus any other high strain if frag == 2 and (pop == 2 or dev == 2 or site == 2): return "2" # also collapse when three nodes are high/major/medium-high combined highish = sum([ 1 if pop >= 1 else 0, 1 if dev >= 1 else 0, 1 if site >= 1 else 0, 1 if frag >= 1 else 0, ]) if highish >= 4 and (dev == 2 or site == 2): return "2" # coherent only when all nodes low/none if pop == 0 and dev == 0 and site == 0 and frag == 0: return "0" return "1" def _risk_score(g: dict) -> float: pop = _map_val(g["population_shift"], POP_MAP, "population_shift") dev = _map_val(g["protocol_deviation_rate"], DEV_MAP, "protocol_deviation_rate") site = _map_val(g["site_variance_level"], SITE_MAP, "site_variance_level") frag = _map_val(g["endpoint_fragility"], FRAG_MAP, "endpoint_fragility") # fragility weighs double raw = pop + dev + site + (2 * frag) # max raw = 2+2+2+4 = 10 return raw / 10.0 def run_scorer(preds_csv_path: str, gold_csv_path: str): with open(gold_csv_path, newline="", encoding="utf-8") as gf: gold_rows = list(csv.DictReader(gf)) for r in gold_rows: _validate_gold_row(r) with open(preds_csv_path, newline="", encoding="utf-8") as pf: pred_rows = list(csv.DictReader(pf)) pred_by_id = {str(r.get("id")).strip(): r for r in pred_rows if r.get("id") is not None} total = 0 correct = 0 confusion = Counter() errors = [] missing_ids = [] for g in gold_rows: gid = str(g["id"]).strip() gold = str(g["label"]).strip() pr = pred_by_id.get(gid) if pr is None: pred = "missing" missing_ids.append(gid) else: pred = _extract_pred_label(pr) confusion[(gold, pred)] += 1 if pred == gold: correct += 1 else: errors.append({ "id": gid, "gold": gold, "pred": pred, "rule_pred": _rule_pred(g), "risk_score": round(_risk_score(g), 4), }) total += 1 report = { "n": total, "accuracy": (correct / total) if total else 0.0, "confusion": {f"{k[0]}->{k[1]}": v for k, v in confusion.items()}, "avg_risk_score": round(sum(_risk_score(r) for r in gold_rows) / max(1, len(gold_rows)), 4), "errors_sample": errors[:25], "missing_ids": missing_ids[:50], } return report if __name__ == "__main__": import argparse p = argparse.ArgumentParser() p.add_argument("--preds_csv", required=True) p.add_argument("--gold_csv", required=True) args = p.parse_args() print(json.dumps(run_scorer(args.preds_csv, args.gold_csv), indent=2))