Cong123779 commited on
Commit
aa15e20
·
verified ·
1 Parent(s): 4cd3af3

Upload folder using huggingface_hub

Browse files
This view is limited to 50 files because it contains too many changes.   See raw diff
Files changed (50) hide show
  1. .gitattributes +24 -0
  2. 01_raw/CGGA/301/mRNAarray_301_expr.zip +0 -0
  3. 01_raw/CGGA/325/CGGA.mRNAseq_325.RSEM-genes.20200506.txt +3 -0
  4. 01_raw/CGGA/325/CGGA.mRNAseq_325_clinical.20200506.txt +1 -0
  5. 01_raw/CGGA/325/__MACOSX/._CGGA.mRNAseq_325.RSEM-genes.20200506.txt +0 -0
  6. 01_raw/CGGA/325/__MACOSX/._CGGA.mRNAseq_325_clinical.20200506.txt +0 -0
  7. 01_raw/CGGA/325/mRNAseq_325_clinical.zip +3 -0
  8. 01_raw/CGGA/325/mRNAseq_325_expr.zip +3 -0
  9. 01_raw/CGGA/693/CGGA.mRNAseq_693.RSEM-genes.20200506.txt +3 -0
  10. 01_raw/CGGA/693/CGGA.mRNAseq_693_clinical.20200506.txt +1 -0
  11. 01_raw/CGGA/693/__MACOSX/._CGGA.mRNAseq_693.RSEM-genes.20200506.txt +0 -0
  12. 01_raw/CGGA/693/__MACOSX/._CGGA.mRNAseq_693_clinical.20200506.txt +0 -0
  13. 01_raw/CGGA/693/mRNAseq_693_clinical.zip +3 -0
  14. 01_raw/CGGA/693/mRNAseq_693_expr.zip +3 -0
  15. 01_raw/GEO/GSE13041_matrix.gz +3 -0
  16. 01_raw/GEO/GSE16011_clinical.txt.gz +0 -0
  17. 01_raw/GEO/GSE16011_matrix.gz +3 -0
  18. 01_raw/GEO/GSE4271_clinical.txt.gz +0 -0
  19. 01_raw/GEO/GSE4271_matrix.gz +3 -0
  20. 01_raw/GEO/GSE4412_matrix.gz +3 -0
  21. 01_raw/GEO/GSE68848_matrix.gz +3 -0
  22. 01_raw/GEO/GSE7696_matrix.gz +3 -0
  23. 01_raw/GEO/REMBRANDT_clinical.txt.gz +3 -0
  24. 01_raw/GEO/REMBRANDT_matrix.gz +3 -0
  25. 01_raw/GEO/REMBRANDT_matrix.gz.part-aa +3 -0
  26. 01_raw/GEO/REMBRANDT_matrix.gz.part-ab +3 -0
  27. 01_raw/TCGA/gbm_clinical.tsv.gz +3 -0
  28. 01_raw/TCGA/gbm_rna_seq.tsv.gz +3 -0
  29. 01_raw/TCGA/gbm_survival.tsv.gz +3 -0
  30. 01_raw/TCGA/lgg_rna_seq.tsv.gz +3 -0
  31. 01_raw/TCGA/lgg_rna_seq.tsv.gz.part-aa +3 -0
  32. 01_raw/TCGA/lgg_rna_seq.tsv.gz.part-ab +3 -0
  33. 01_raw/TCGA/lgg_rna_seq_test.tsv.gz +3 -0
  34. 01_raw/TCGA/lgg_rna_seq_test.tsv.gz.part-aa +3 -0
  35. 01_raw/TCGA/lgg_rna_seq_test.tsv.gz.part-ab +3 -0
  36. 01_raw/TCGA/lgg_survival.tsv.gz +3 -0
  37. 02_processed/training/X_test.csv +0 -0
  38. 02_processed/training/X_train.csv +3 -0
  39. 02_processed/training/X_val.csv +0 -0
  40. 02_processed/training/scaler.pkl +3 -0
  41. 02_processed/training/test_internal/X.csv +0 -0
  42. 02_processed/training/test_internal/y.csv +25 -0
  43. 02_processed/training/train/X.csv +3 -0
  44. 02_processed/training/train/y.csv +112 -0
  45. 02_processed/training/val/X.csv +0 -0
  46. 02_processed/training/val/y.csv +26 -0
  47. 02_processed/training/y_test.csv +27 -0
  48. 02_processed/training/y_train.csv +118 -0
  49. 02_processed/training/y_val.csv +27 -0
  50. 02_processed/validation/CGGA_325/X.csv +3 -0
.gitattributes CHANGED
@@ -58,3 +58,27 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
58
  # Video files - compressed
59
  *.mp4 filter=lfs diff=lfs merge=lfs -text
60
  *.webm filter=lfs diff=lfs merge=lfs -text
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
58
  # Video files - compressed
59
  *.mp4 filter=lfs diff=lfs merge=lfs -text
60
  *.webm filter=lfs diff=lfs merge=lfs -text
61
+ 01_raw/CGGA/325/CGGA.mRNAseq_325.RSEM-genes.20200506.txt filter=lfs diff=lfs merge=lfs -text
62
+ 01_raw/CGGA/693/CGGA.mRNAseq_693.RSEM-genes.20200506.txt filter=lfs diff=lfs merge=lfs -text
63
+ 01_raw/GEO/REMBRANDT_matrix.gz.part-aa filter=lfs diff=lfs merge=lfs -text
64
+ 01_raw/GEO/REMBRANDT_matrix.gz.part-ab filter=lfs diff=lfs merge=lfs -text
65
+ 01_raw/TCGA/lgg_rna_seq.tsv.gz.part-aa filter=lfs diff=lfs merge=lfs -text
66
+ 01_raw/TCGA/lgg_rna_seq.tsv.gz.part-ab filter=lfs diff=lfs merge=lfs -text
67
+ 01_raw/TCGA/lgg_rna_seq_test.tsv.gz.part-aa filter=lfs diff=lfs merge=lfs -text
68
+ 01_raw/TCGA/lgg_rna_seq_test.tsv.gz.part-ab filter=lfs diff=lfs merge=lfs -text
69
+ 02_processed/training/X_train.csv filter=lfs diff=lfs merge=lfs -text
70
+ 02_processed/training/train/X.csv filter=lfs diff=lfs merge=lfs -text
71
+ 02_processed/validation/CGGA_325/X.csv filter=lfs diff=lfs merge=lfs -text
72
+ 02_processed/validation/CGGA_693/X.csv filter=lfs diff=lfs merge=lfs -text
73
+ 02_processed/validation/CGGA_693/X.csv.part-aa filter=lfs diff=lfs merge=lfs -text
74
+ 02_processed/validation/CGGA_693/X.csv.part-ab filter=lfs diff=lfs merge=lfs -text
75
+ 02_processed/validation/GSE13041/X.csv filter=lfs diff=lfs merge=lfs -text
76
+ 02_processed/validation/GSE4271/X.csv filter=lfs diff=lfs merge=lfs -text
77
+ 02_processed/validation/GSE4412/X.csv filter=lfs diff=lfs merge=lfs -text
78
+ 02_processed/validation/GSE7696/X.csv filter=lfs diff=lfs merge=lfs -text
79
+ 02_processed/validation/REMBRANDT/X.csv filter=lfs diff=lfs merge=lfs -text
80
+ 02_processed/validation/REMBRANDT/X.csv.part-aa filter=lfs diff=lfs merge=lfs -text
81
+ 02_processed/validation/REMBRANDT/X.csv.part-ab filter=lfs diff=lfs merge=lfs -text
82
+ 02_processed/validation/TCGA_LGG/X.csv filter=lfs diff=lfs merge=lfs -text
83
+ 02_processed/validation/TCGA_LGG/X.csv.part-aa filter=lfs diff=lfs merge=lfs -text
84
+ 02_processed/validation/TCGA_LGG/X.csv.part-ab filter=lfs diff=lfs merge=lfs -text
01_raw/CGGA/301/mRNAarray_301_expr.zip ADDED
File without changes
01_raw/CGGA/325/CGGA.mRNAseq_325.RSEM-genes.20200506.txt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4237a21fdceefd81a86e36ee62330be01bee1b5129f3ae3d8662bb0df44bf586
3
+ size 40034276
01_raw/CGGA/325/CGGA.mRNAseq_325_clinical.20200506.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ CGGA_ID PRS_type Histology Grade Gender Age OS Censor (alive=0; dead=1) Radio_status (treated=1;un-treated=0) Chemo_status (TMZ treated=1;un-treated=0) IDH_mutation_status 1p19q_codeletion_status MGMTp_methylation_status
01_raw/CGGA/325/__MACOSX/._CGGA.mRNAseq_325.RSEM-genes.20200506.txt ADDED
Binary file (334 Bytes). View file
 
01_raw/CGGA/325/__MACOSX/._CGGA.mRNAseq_325_clinical.20200506.txt ADDED
Binary file (334 Bytes). View file
 
01_raw/CGGA/325/mRNAseq_325_clinical.zip ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:e8c00648666bb97ab3d68132970590b0f6713951c3b849ed83f13d421037e28e
3
+ size 4546
01_raw/CGGA/325/mRNAseq_325_expr.zip ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:78f1549f5d369f2381fa11501855929d4b5e493a2d129a3c81af2f522afb186b
3
+ size 14292049
01_raw/CGGA/693/CGGA.mRNAseq_693.RSEM-genes.20200506.txt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ba0d8e759e0b9201b5a13cb94c9438a7c135ea018f212faaaaf243823cff9670
3
+ size 83545000
01_raw/CGGA/693/CGGA.mRNAseq_693_clinical.20200506.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ CGGA_ID PRS_type Histology Grade Gender Age OS Censor (alive=0; dead=1) Radio_status (treated=1;un-treated=0) Chemo_status (TMZ treated=1;un-treated=0) IDH_mutation_status 1p19q_codeletion_status MGMTp_methylation_status
01_raw/CGGA/693/__MACOSX/._CGGA.mRNAseq_693.RSEM-genes.20200506.txt ADDED
Binary file (318 Bytes). View file
 
01_raw/CGGA/693/__MACOSX/._CGGA.mRNAseq_693_clinical.20200506.txt ADDED
Binary file (334 Bytes). View file
 
01_raw/CGGA/693/mRNAseq_693_clinical.zip ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4a587a484f2560232a887def1a99f908a7067ba300bf01a21b3cc65748e40268
3
+ size 8418
01_raw/CGGA/693/mRNAseq_693_expr.zip ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:5c4971d75fd7121be73d6e91b334d5b9dd44f4b8d24b9b0ca80ac92ee623a08d
3
+ size 29738046
01_raw/GEO/GSE13041_matrix.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:1b4581b024b47fec47487a477a519b7f69c0b2847ce9cd7084ae3e8b559da3ed
3
+ size 24317619
01_raw/GEO/GSE16011_clinical.txt.gz ADDED
File without changes
01_raw/GEO/GSE16011_matrix.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:47a6408994e562739286e225ea563aedcd7aaf6992d2d6ec22b40e7ab0eb3a70
3
+ size 27038048
01_raw/GEO/GSE4271_clinical.txt.gz ADDED
File without changes
01_raw/GEO/GSE4271_matrix.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:956b97238cd0a75d0c82e166d716b1e3ee21c73a24e77ca75b1243e43b67ebad
3
+ size 4938975
01_raw/GEO/GSE4412_matrix.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:66559544eb75f33fe697c5c2f3138343c01c9043bff07a11b339a5fd392f36b9
3
+ size 8706555
01_raw/GEO/GSE68848_matrix.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:9af4a5fe5ebaf734423a05eaf54f713c443884016447246b687a6e72607ae277
3
+ size 992
01_raw/GEO/GSE7696_matrix.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:6b4cb5d333e12f934e88e926026ca6a4aa161f1f37466ae802f3111b9c0caa25
3
+ size 18132015
01_raw/GEO/REMBRANDT_clinical.txt.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a3cdac542f396ba35473eef83dabc4a6134ac23c3a637ac0cb3fc5bcea144ac6
3
+ size 13363
01_raw/GEO/REMBRANDT_matrix.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:1b45c1229b3d8568b97f4bf601b271983c92806219e2416d4c9bf856d7115c72
3
+ size 160764584
01_raw/GEO/REMBRANDT_matrix.gz.part-aa ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ce8bcbfe02c1abf3f4aa4ceb39e0bc45ddf692d7c2bedb13b9b712691320ea6b
3
+ size 83886080
01_raw/GEO/REMBRANDT_matrix.gz.part-ab ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:1fb1d2a29dd4404965c472a904a9694cb90fad738ed1070033b0dafa8b476ec2
3
+ size 76878504
01_raw/TCGA/gbm_clinical.tsv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ed7c5f6994e15aca6761d442ab8aa186cd2bbb655b5ad36d1776a7e6932f4ba5
3
+ size 148485
01_raw/TCGA/gbm_rna_seq.tsv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:0403b3789166ffe6ea83a2afb3128ff76a3c84dc222cd6bb80c3f832f7f325d8
3
+ size 49329977
01_raw/TCGA/gbm_survival.tsv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:bd5aa57cf5ff84b975eba4129973371ce1bd244ae7394783e67e5886bb632e6f
3
+ size 5366
01_raw/TCGA/lgg_rna_seq.tsv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4472d601c92be586fdce3b5b8464b86ab7b1e3c72076c58b393fa2a8c1450ee3
3
+ size 143625347
01_raw/TCGA/lgg_rna_seq.tsv.gz.part-aa ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c2a36cab9b033bb7453422ca918fc2c30f419ecb96e416e22649301a36c7b693
3
+ size 83886080
01_raw/TCGA/lgg_rna_seq.tsv.gz.part-ab ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ad22c03d822074f551b30aed336b8f0989464adb30b769fd10f84b01d424c16a
3
+ size 59739267
01_raw/TCGA/lgg_rna_seq_test.tsv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4472d601c92be586fdce3b5b8464b86ab7b1e3c72076c58b393fa2a8c1450ee3
3
+ size 143625347
01_raw/TCGA/lgg_rna_seq_test.tsv.gz.part-aa ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c2a36cab9b033bb7453422ca918fc2c30f419ecb96e416e22649301a36c7b693
3
+ size 83886080
01_raw/TCGA/lgg_rna_seq_test.tsv.gz.part-ab ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ad22c03d822074f551b30aed336b8f0989464adb30b769fd10f84b01d424c16a
3
+ size 59739267
01_raw/TCGA/lgg_survival.tsv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:442b0e6bca05ea74e9fb78d7bae0312ffbde8051132910db8030ff317ca48dd6
3
+ size 4658
02_processed/training/X_test.csv ADDED
The diff for this file is too large to render. See raw diff
 
02_processed/training/X_train.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d03df50aaf46e911c1edb35acbdc317f2afa18882c1bae520508b5ff58941474
3
+ size 38064732
02_processed/training/X_val.csv ADDED
The diff for this file is too large to render. See raw diff
 
02_processed/training/scaler.pkl ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:99cc68d51a5d0db65e46fd686037a23df687c2a4f2bca5cdb02dbbd3d9580ccc
3
+ size 25635171
02_processed/training/test_internal/X.csv ADDED
The diff for this file is too large to render. See raw diff
 
02_processed/training/test_internal/y.csv ADDED
@@ -0,0 +1,25 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ,OS,OS.time,Treatment
2
+ TCGA-06-0743-01A,1,803.0,Chemo+Radiation
3
+ TCGA-06-0171-02A,1,399.0,Chemo+Radiation
4
+ TCGA-19-4065-02A,0,214.0,Chemo+Radiation
5
+ TCGA-14-2554-01A,1,532.0,Chemo+Radiation
6
+ TCGA-19-0957-02A,1,666.0,Chemo+Radiation
7
+ TCGA-12-0618-01A,1,395.0,Chemo+Radiation
8
+ TCGA-02-2486-01A,1,618.0,Chemo+Radiation
9
+ TCGA-19-2629-01A,1,737.0,Chemo+Radiation
10
+ TCGA-27-1832-01A,1,300.0,Chemo+Radiation
11
+ TCGA-27-2523-01A,1,489.0,Chemo+Radiation
12
+ TCGA-06-0125-01A,1,1448.0,Chemo+Radiation
13
+ TCGA-32-4213-01A,0,604.0,Chemo+Radiation
14
+ TCGA-06-2567-01A,1,133.0,Chemo+Radiation
15
+ TCGA-19-1787-01B,1,385.0,Chemo+Radiation
16
+ TCGA-32-1970-01A,1,468.0,Chemo+Radiation
17
+ TCGA-14-0736-02A,1,460.0,Chemo+Radiation
18
+ TCGA-06-0646-01A,1,175.0,Chemo+Radiation
19
+ TCGA-32-2638-01A,1,766.0,Chemo+Radiation
20
+ TCGA-16-1045-01B,1,883.0,Chemo+Radiation
21
+ TCGA-76-4931-01A,1,279.0,Chemo+Radiation
22
+ TCGA-28-1753-01A,0,37.0,Chemo+Radiation
23
+ TCGA-06-5417-01A,0,155.0,Chemo+Radiation
24
+ TCGA-14-1402-02A,1,975.0,Chemo+Radiation
25
+ TCGA-27-1830-01A,1,154.0,Chemo+Radiation
02_processed/training/train/X.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ec870328dabaa62557fd220c63e81e3a7198bcd76a5274fbf22c3146d326aefd
3
+ size 35722033
02_processed/training/train/y.csv ADDED
@@ -0,0 +1,112 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ,OS,OS.time,Treatment
2
+ TCGA-27-2519-01A,1,550.0,Chemo+Radiation
3
+ TCGA-28-5216-01A,0,415.0,Chemo+Radiation
4
+ TCGA-14-0787-01A,1,68.0,Chemo+Radiation
5
+ TCGA-06-5408-01A,1,357.0,Chemo+Radiation
6
+ TCGA-06-5416-01A,0,204.0,Chemo+Radiation
7
+ TCGA-26-5132-01A,0,286.0,Chemo+Radiation
8
+ TCGA-06-5859-01A,0,139.0,Chemo+Radiation
9
+ TCGA-06-2562-01A,1,382.0,Chemo+Radiation
10
+ TCGA-19-1389-02A,1,141.0,Chemo+Radiation
11
+ TCGA-28-1747-01C,1,77.0,Chemo+Radiation
12
+ TCGA-02-2485-01A,0,470.0,Chemo+Radiation
13
+ TCGA-19-1390-01A,1,772.0,Chemo+Radiation
14
+ TCGA-06-0190-02A,1,317.0,Chemo+Radiation
15
+ TCGA-32-1982-01A,1,142.0,Chemo+Radiation
16
+ TCGA-14-0789-01A,1,342.0,Chemo+Radiation
17
+ TCGA-06-0187-01A,1,828.0,Chemo+Radiation
18
+ TCGA-06-0210-02A,1,225.0,Chemo+Radiation
19
+ TCGA-06-0129-01A,1,1024.0,Chemo+Radiation
20
+ TCGA-06-0882-01A,1,632.0,Chemo+Radiation
21
+ TCGA-26-5134-01A,0,167.0,Chemo+Radiation
22
+ TCGA-06-0686-01A,1,432.0,Chemo+Radiation
23
+ TCGA-27-1835-01A,1,648.0,Chemo+Radiation
24
+ TCGA-06-0157-01A,1,97.0,Chemo+Radiation
25
+ TCGA-06-0125-02A,1,1448.0,Chemo+Radiation
26
+ TCGA-28-2514-01A,0,160.0,Chemo+Radiation
27
+ TCGA-06-0221-02A,1,603.0,Chemo+Radiation
28
+ TCGA-12-5295-01A,1,454.0,Chemo+Radiation
29
+ TCGA-14-0790-01B,1,419.0,Chemo+Radiation
30
+ TCGA-06-0644-01A,1,384.0,Chemo+Radiation
31
+ TCGA-28-2499-01A,1,95.0,Chemo+Radiation
32
+ TCGA-06-0174-01A,1,98.0,Chemo+Radiation
33
+ TCGA-19-2624-01A,1,5.0,Chemo+Radiation
34
+ TCGA-28-5215-01A,1,335.0,Chemo+Radiation
35
+ TCGA-06-5858-01A,0,187.0,Chemo+Radiation
36
+ TCGA-06-5856-01A,1,114.0,Chemo+Radiation
37
+ TCGA-19-5960-01A,1,455.0,Chemo+Radiation
38
+ TCGA-12-0619-01A,1,1062.0,Chemo+Radiation
39
+ TCGA-19-2620-01A,1,148.0,Chemo+Radiation
40
+ TCGA-28-5208-01A,1,544.0,Chemo+Radiation
41
+ TCGA-32-1980-01A,1,36.0,Chemo+Radiation
42
+ TCGA-27-2528-01A,1,480.0,Chemo+Radiation
43
+ TCGA-06-0152-02A,1,375.0,Chemo+Radiation
44
+ TCGA-06-2563-01A,0,932.0,Chemo+Radiation
45
+ TCGA-14-1825-01A,1,232.0,Chemo+Radiation
46
+ TCGA-28-5213-01A,1,951.0,Chemo+Radiation
47
+ TCGA-26-5133-01A,0,452.0,Chemo+Radiation
48
+ TCGA-12-3650-01A,1,333.0,Chemo+Radiation
49
+ TCGA-19-2619-01A,0,294.0,Chemo+Radiation
50
+ TCGA-14-1034-01A,1,485.0,Chemo+Radiation
51
+ TCGA-06-0749-01A,1,82.0,Chemo+Radiation
52
+ TCGA-27-2524-01A,1,231.0,Chemo+Radiation
53
+ TCGA-06-0747-01A,1,82.0,Chemo+Radiation
54
+ TCGA-06-5412-01A,1,138.0,Chemo+Radiation
55
+ TCGA-27-2521-01A,1,510.0,Chemo+Radiation
56
+ TCGA-14-0781-01B,1,29.0,Chemo+Radiation
57
+ TCGA-27-1834-01A,1,1233.0,Chemo+Radiation
58
+ TCGA-06-2559-01A,1,150.0,Chemo+Radiation
59
+ TCGA-12-3653-01A,1,442.0,Chemo+Radiation
60
+ TCGA-41-5651-01A,1,460.0,Chemo+Radiation
61
+ TCGA-06-0645-01A,1,175.0,Chemo+Radiation
62
+ TCGA-06-0744-01A,1,1426.0,Chemo+Radiation
63
+ TCGA-28-5207-01A,1,343.0,Chemo+Radiation
64
+ TCGA-19-2625-01A,1,124.0,Chemo+Radiation
65
+ TCGA-06-0190-01A,1,317.0,Chemo+Radiation
66
+ TCGA-28-5220-01A,1,388.0,Chemo+Radiation
67
+ TCGA-06-0130-01A,1,394.0,Chemo+Radiation
68
+ TCGA-06-0211-01A,1,360.0,Chemo+Radiation
69
+ TCGA-06-2565-01A,1,506.0,Chemo+Radiation
70
+ TCGA-12-3652-01A,1,1062.0,Chemo+Radiation
71
+ TCGA-06-0168-01A,1,598.0,Chemo+Radiation
72
+ TCGA-76-4927-01A,1,535.0,Chemo+Radiation
73
+ TCGA-06-0750-01A,1,28.0,Chemo+Radiation
74
+ TCGA-27-1837-01A,1,427.0,Chemo+Radiation
75
+ TCGA-06-0238-01A,1,405.0,Chemo+Radiation
76
+ TCGA-06-0141-01A,1,313.0,Chemo+Radiation
77
+ TCGA-06-0878-01A,0,218.0,Chemo+Radiation
78
+ TCGA-12-0616-01A,1,448.0,Chemo+Radiation
79
+ TCGA-08-0386-01A,1,548.0,Chemo+Radiation
80
+ TCGA-14-1034-02B,1,485.0,Chemo+Radiation
81
+ TCGA-32-5222-01A,1,585.0,Chemo+Radiation
82
+ TCGA-06-5411-01A,1,254.0,Chemo+Radiation
83
+ TCGA-32-2616-01A,1,224.0,Chemo+Radiation
84
+ TCGA-06-0132-01A,1,771.0,Chemo+Radiation
85
+ TCGA-28-5204-01A,1,454.0,Chemo+Radiation
86
+ TCGA-06-2561-01A,1,537.0,Chemo+Radiation
87
+ TCGA-06-5414-01A,0,273.0,Chemo+Radiation
88
+ TCGA-06-5410-01A,1,108.0,Chemo+Radiation
89
+ TCGA-06-5418-01A,1,83.0,Chemo+Radiation
90
+ TCGA-15-1444-01A,1,1537.0,Chemo+Radiation
91
+ TCGA-26-5135-01A,1,270.0,Chemo+Radiation
92
+ TCGA-06-0211-02A,1,360.0,Chemo+Radiation
93
+ TCGA-26-5139-01A,0,48.0,Chemo+Radiation
94
+ TCGA-76-4925-01A,1,146.0,Chemo+Radiation
95
+ TCGA-06-0210-01A,1,225.0,Chemo+Radiation
96
+ TCGA-32-2632-01A,1,269.0,Chemo+Radiation
97
+ TCGA-06-0219-01A,1,22.0,Chemo+Radiation
98
+ TCGA-06-0745-01A,1,239.0,Chemo+Radiation
99
+ TCGA-76-4928-01B,1,94.0,Chemo+Radiation
100
+ TCGA-06-5415-01A,0,260.0,Chemo+Radiation
101
+ TCGA-02-0047-01A,1,448.0,Chemo+Radiation
102
+ TCGA-32-2634-01A,0,693.0,Chemo+Radiation
103
+ TCGA-41-2572-01A,1,406.0,Chemo+Radiation
104
+ TCGA-06-0184-01A,1,2126.0,Chemo+Radiation
105
+ TCGA-28-2509-01A,0,145.0,Chemo+Radiation
106
+ TCGA-41-2571-01A,1,26.0,Chemo+Radiation
107
+ TCGA-06-2564-01A,0,181.0,Chemo+Radiation
108
+ TCGA-19-4065-01A,0,214.0,Chemo+Radiation
109
+ TCGA-06-5413-01A,0,268.0,Chemo+Radiation
110
+ TCGA-76-4932-01A,1,1458.0,Chemo+Radiation
111
+ TCGA-12-1597-01B,1,675.0,Chemo+Radiation
112
+ TCGA-76-4929-01A,1,111.0,Chemo+Radiation
02_processed/training/val/X.csv ADDED
The diff for this file is too large to render. See raw diff
 
02_processed/training/val/y.csv ADDED
@@ -0,0 +1,26 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ,OS,OS.time,Treatment
2
+ TCGA-16-0846-01A,1,119.0,Chemo+Radiation
3
+ TCGA-27-2526-01A,1,87.0,Chemo+Radiation
4
+ TCGA-06-2570-01A,0,958.0,Chemo+Radiation
5
+ TCGA-12-5299-01A,1,98.0,Chemo+Radiation
6
+ TCGA-26-5136-01B,1,577.0,Chemo+Radiation
7
+ TCGA-06-0649-01B,1,64.0,Chemo+Radiation
8
+ TCGA-02-2483-01A,0,466.0,Chemo+Radiation
9
+ TCGA-12-0821-01A,1,323.0,Chemo+Radiation
10
+ TCGA-26-1442-01A,0,953.0,Chemo+Radiation
11
+ TCGA-32-2615-01A,1,485.0,Chemo+Radiation
12
+ TCGA-28-5209-01A,0,442.0,Chemo+Radiation
13
+ TCGA-41-4097-01A,1,6.0,Chemo+Radiation
14
+ TCGA-06-2558-01A,1,380.0,Chemo+Radiation
15
+ TCGA-14-0817-01A,1,164.0,Chemo+Radiation
16
+ TCGA-06-2557-01A,1,33.0,Chemo+Radiation
17
+ TCGA-06-0138-01A,1,737.0,Chemo+Radiation
18
+ TCGA-15-0742-01A,1,419.0,Chemo+Radiation
19
+ TCGA-06-0211-01B,1,360.0,Chemo+Radiation
20
+ TCGA-76-4926-01B,1,138.0,Chemo+Radiation
21
+ TCGA-28-2513-01A,0,222.0,Chemo+Radiation
22
+ TCGA-06-0158-01A,1,329.0,Chemo+Radiation
23
+ TCGA-14-1823-01A,1,543.0,Chemo+Radiation
24
+ TCGA-41-3915-01A,1,360.0,Chemo+Radiation
25
+ TCGA-02-0055-01A,1,76.0,Chemo+Radiation
26
+ TCGA-06-0156-01A,1,178.0,Chemo+Radiation
02_processed/training/y_test.csv ADDED
@@ -0,0 +1,27 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ,OS,OS.time
2
+ TCGA-41-5651-01A,1,460.0
3
+ TCGA-28-2514-01A,0,160.0
4
+ TCGA-06-5415-01A,0,260.0
5
+ TCGA-27-1832-01A,1,300.0
6
+ TCGA-26-5139-01A,0,48.0
7
+ TCGA-32-1980-01A,1,36.0
8
+ TCGA-06-0210-02A,1,225.0
9
+ TCGA-14-0789-01A,1,342.0
10
+ TCGA-32-1970-01A,1,468.0
11
+ TCGA-06-0125-02A,1,1448.0
12
+ TCGA-08-0386-01A,1,548.0
13
+ TCGA-19-2620-01A,1,148.0
14
+ TCGA-06-0238-01A,1,405.0
15
+ TCGA-19-2624-01A,1,5.0
16
+ TCGA-14-2554-01A,1,532.0
17
+ TCGA-06-0132-01A,1,771.0
18
+ TCGA-19-0957-02A,1,666.0
19
+ TCGA-27-1834-01A,1,1233.0
20
+ TCGA-06-0878-01A,0,218.0
21
+ TCGA-76-4932-01A,1,1458.0
22
+ TCGA-32-2634-01A,0,693.0
23
+ TCGA-19-1390-01A,1,772.0
24
+ TCGA-76-4931-01A,1,279.0
25
+ TCGA-12-3652-01A,1,1062.0
26
+ TCGA-14-1402-02A,1,975.0
27
+ TCGA-28-1747-01C,1,77.0
02_processed/training/y_train.csv ADDED
@@ -0,0 +1,118 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ,OS,OS.time
2
+ TCGA-14-1825-01A,1,232.0
3
+ TCGA-06-5416-01A,0,204.0
4
+ TCGA-06-0156-01A,1,178.0
5
+ TCGA-02-0055-01A,1,76.0
6
+ TCGA-06-2567-01A,1,133.0
7
+ TCGA-06-5858-01A,0,187.0
8
+ TCGA-06-5414-01A,0,273.0
9
+ TCGA-06-0646-01A,1,175.0
10
+ TCGA-28-1753-01A,0,37.0
11
+ TCGA-06-2562-01A,1,382.0
12
+ TCGA-32-1982-01A,1,142.0
13
+ TCGA-26-5134-01A,0,167.0
14
+ TCGA-06-0750-01A,1,28.0
15
+ TCGA-28-5215-01A,1,335.0
16
+ TCGA-76-4927-01A,1,535.0
17
+ TCGA-06-0138-01A,1,737.0
18
+ TCGA-28-2513-01A,0,222.0
19
+ TCGA-19-4065-02A,0,214.0
20
+ TCGA-27-2519-01A,1,550.0
21
+ TCGA-28-2499-01A,1,95.0
22
+ TCGA-41-2571-01A,1,26.0
23
+ TCGA-28-2509-01A,0,145.0
24
+ TCGA-19-4065-01A,0,214.0
25
+ TCGA-41-4097-01A,1,6.0
26
+ TCGA-02-0047-01A,1,448.0
27
+ TCGA-15-1444-01A,1,1537.0
28
+ TCGA-12-0616-01A,1,448.0
29
+ TCGA-14-0787-01A,1,68.0
30
+ TCGA-06-2569-01A,0,13.0
31
+ TCGA-06-0749-01A,1,82.0
32
+ TCGA-14-0871-01A,1,880.0
33
+ TCGA-06-0211-01B,1,360.0
34
+ TCGA-06-2559-01A,1,150.0
35
+ TCGA-28-5218-01A,1,157.0
36
+ TCGA-27-2521-01A,1,510.0
37
+ TCGA-06-1804-01A,1,414.0
38
+ TCGA-06-0187-01A,1,828.0
39
+ TCGA-02-2483-01A,0,466.0
40
+ TCGA-06-0747-01A,1,82.0
41
+ TCGA-12-1597-01B,1,675.0
42
+ TCGA-06-0644-01A,1,384.0
43
+ TCGA-12-0618-01A,1,395.0
44
+ TCGA-06-0184-01A,1,2126.0
45
+ TCGA-06-0745-01A,1,239.0
46
+ TCGA-16-1045-01B,1,883.0
47
+ TCGA-19-2625-01A,1,124.0
48
+ TCGA-06-2570-01A,0,958.0
49
+ TCGA-41-2572-01A,1,406.0
50
+ TCGA-06-2565-01A,1,506.0
51
+ TCGA-41-3915-01A,1,360.0
52
+ TCGA-06-2563-01A,0,932.0
53
+ TCGA-06-5408-01A,1,357.0
54
+ TCGA-28-5216-01A,0,415.0
55
+ TCGA-06-0178-01A,1,2681.0
56
+ TCGA-27-2523-01A,1,489.0
57
+ TCGA-32-5222-01A,1,585.0
58
+ TCGA-27-1837-01A,1,427.0
59
+ TCGA-06-0211-02A,1,360.0
60
+ TCGA-06-0210-01A,1,225.0
61
+ TCGA-32-2638-01A,1,766.0
62
+ TCGA-06-0649-01B,1,64.0
63
+ TCGA-26-5136-01B,1,577.0
64
+ TCGA-06-0152-02A,1,375.0
65
+ TCGA-14-0817-01A,1,164.0
66
+ TCGA-27-2528-01A,1,480.0
67
+ TCGA-32-2632-01A,1,269.0
68
+ TCGA-76-4926-01B,1,138.0
69
+ TCGA-14-1823-01A,1,543.0
70
+ TCGA-12-3650-01A,1,333.0
71
+ TCGA-32-2616-01A,1,224.0
72
+ TCGA-06-0882-01A,1,632.0
73
+ TCGA-06-5412-01A,1,138.0
74
+ TCGA-06-5417-01A,0,155.0
75
+ TCGA-19-2629-01A,1,737.0
76
+ TCGA-06-0139-01A,1,362.0
77
+ TCGA-26-5132-01A,0,286.0
78
+ TCGA-19-1389-02A,1,141.0
79
+ TCGA-14-0781-01B,1,29.0
80
+ TCGA-14-0736-02A,1,460.0
81
+ TCGA-06-5418-01A,1,83.0
82
+ TCGA-12-5295-01A,1,454.0
83
+ TCGA-14-0790-01B,1,419.0
84
+ TCGA-06-2557-01A,1,33.0
85
+ TCGA-02-2485-01A,0,470.0
86
+ TCGA-28-5208-01A,1,544.0
87
+ TCGA-28-5207-01A,1,343.0
88
+ TCGA-06-0130-01A,1,394.0
89
+ TCGA-06-2561-01A,1,537.0
90
+ TCGA-06-0158-01A,1,329.0
91
+ TCGA-06-0141-01A,1,313.0
92
+ TCGA-16-0846-01A,1,119.0
93
+ TCGA-06-0221-02A,1,603.0
94
+ TCGA-06-0171-02A,1,399.0
95
+ TCGA-02-2486-01A,1,618.0
96
+ TCGA-06-2564-01A,0,181.0
97
+ TCGA-06-5856-01A,1,114.0
98
+ TCGA-19-5960-01A,1,455.0
99
+ TCGA-06-5410-01A,1,108.0
100
+ TCGA-12-5299-01A,1,98.0
101
+ TCGA-27-1831-01A,1,505.0
102
+ TCGA-06-0174-01A,1,98.0
103
+ TCGA-06-5413-01A,0,268.0
104
+ TCGA-28-5220-01A,1,388.0
105
+ TCGA-27-1835-01A,1,648.0
106
+ TCGA-14-1034-02B,1,485.0
107
+ TCGA-06-0190-01A,1,317.0
108
+ TCGA-19-1787-01B,1,385.0
109
+ TCGA-14-1034-01A,1,485.0
110
+ TCGA-27-1830-01A,1,154.0
111
+ TCGA-06-0743-01A,1,803.0
112
+ TCGA-06-0645-01A,1,175.0
113
+ TCGA-06-6698-01A,0,145.0
114
+ TCGA-06-0157-01A,1,97.0
115
+ TCGA-28-5209-01A,0,442.0
116
+ TCGA-06-2558-01A,1,380.0
117
+ TCGA-32-2615-01A,1,485.0
118
+ TCGA-32-4213-01A,0,604.0
02_processed/training/y_val.csv ADDED
@@ -0,0 +1,27 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ,OS,OS.time
2
+ TCGA-76-4928-01B,1,94.0
3
+ TCGA-06-0744-01A,1,1426.0
4
+ TCGA-76-4929-01A,1,111.0
5
+ TCGA-06-0129-01A,1,1024.0
6
+ TCGA-26-5133-01A,0,452.0
7
+ TCGA-06-0686-01A,1,432.0
8
+ TCGA-12-3653-01A,1,442.0
9
+ TCGA-27-2526-01A,1,87.0
10
+ TCGA-06-5859-01A,0,139.0
11
+ TCGA-26-5135-01A,1,270.0
12
+ TCGA-19-2619-01A,0,294.0
13
+ TCGA-06-0190-02A,1,317.0
14
+ TCGA-06-0168-01A,1,598.0
15
+ TCGA-27-2524-01A,1,231.0
16
+ TCGA-12-0821-01A,1,323.0
17
+ TCGA-14-1829-01A,0,218.0
18
+ TCGA-28-5213-01A,1,951.0
19
+ TCGA-76-4925-01A,1,146.0
20
+ TCGA-06-0125-01A,1,1448.0
21
+ TCGA-06-0219-01A,1,22.0
22
+ TCGA-28-5204-01A,1,454.0
23
+ TCGA-06-5411-01A,1,254.0
24
+ TCGA-15-0742-01A,1,419.0
25
+ TCGA-06-0211-01A,1,360.0
26
+ TCGA-26-1442-01A,0,953.0
27
+ TCGA-12-0619-01A,1,1062.0
02_processed/validation/CGGA_325/X.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:9eaffecc360be759835df7e735c186577fc700859bd6fba87bd816c8b4a8fd08
3
+ size 98712511