"""Aggregate the scaled Hugging Face GPU Job results (downloaded from the bucket).""" from __future__ import annotations import argparse import glob import json import os from collections import defaultdict import numpy as np LABEL = {"stgfn": "ST-GFN (Ours)", "tb": "TB", "fm": "FM", "subtb": "SubTB", "db": "DB", "eflownet": "EFlowNet", "stochastic_gfn": "Stochastic-GFN", "tb_rnd": "TB+RND", "tb_novelty": "TB+Novelty", "tb_icm": "TB+ICM", "tb_cv": "TB+ControlVar"} ORDER = ["stgfn", "tb", "fm", "subtb", "db", "eflownet", "stochastic_gfn", "tb_rnd", "tb_novelty", "tb_icm", "tb_cv"] METRICS = { "hypergrid": [("modes_found", "Modes (of 256)", True), ("coverage_pct", "Cov.%", True), ("l1_to_target", "L1 to P*", False)], "singlecell_proxy": [("target_corr", "Corr.", True), ("l1_error", "L1", False), ("mean_reward", "Mean R", True)], } def welch_p(a, b): from math import erfc, sqrt a, b = np.array(a, float), np.array(b, float) if len(a) < 2 or len(b) < 2: return None se = np.sqrt(a.var(ddof=1) / len(a) + b.var(ddof=1) / len(b)) if se == 0: return None return float(erfc(abs((a.mean() - b.mean()) / se) / sqrt(2))) if __name__ == "__main__": ap = argparse.ArgumentParser() ap.add_argument("--dir", default="../outputs/scaled") ap.add_argument("--save", default="../outputs/summary_scaled.json") args = ap.parse_args() data = defaultdict(lambda: defaultdict(list)) for p in glob.glob(os.path.join(args.dir, "**", "*.json"), recursive=True): if os.path.basename(p).startswith("summary"): continue try: with open(p) as f: r = json.load(f) if "env" in r and "method" in r: data[r["env"]][r["method"]].append(r) except (json.JSONDecodeError, KeyError): continue summary = {} for env, metrics in METRICS.items(): if env not in data: continue cfg = data[env][list(data[env])[0]][0]["config"] scale = (f"grid {cfg['grid_size']}x{cfg['grid_size']}, period {cfg['period']}" if env == "hypergrid" else f"{cfg['n_genes']} choose {cfg['k_genes']}") print(f"\n{'='*88}\n{env.upper()} — SCALED on HF GPU Job ({scale}), " f"{cfg['iters']} iters, mean ± 95% CI\n{'='*88}") print(f"{'Method':22s} {'n':>2s} " + " ".join(f"{n:>18s}" for _, n, _ in metrics)) summary[env] = {"scale": scale, "iters": cfg["iters"], "methods": {}} base = {k: [r["final"].get(k) for r in data[env].get("stgfn", [])] for k, _, _ in metrics} for m in ORDER: if m not in data[env]: continue runs, cells, entry = data[env][m], [], {} for key, _, _ in metrics: vals = [r["final"].get(key) for r in runs if r["final"].get(key) is not None] if not vals: cells.append(f"{'—':>18s}") continue mu = float(np.mean(vals)) ci = float(1.96 * np.std(vals, ddof=1) / np.sqrt(len(vals))) if len(vals) > 1 else 0.0 star = "" if m != "stgfn": bv = [x for x in base.get(key, []) if x is not None] if len(bv) > 1 and len(vals) > 1: p = welch_p(bv, vals) entry[key + "_p_vs_stgfn"] = p if p is not None and p < 0.05: star = "*" entry[key] = {"mean": mu, "ci95": ci, "values": vals} cells.append(f"{mu:13.3f}±{ci:4.3f}{star}"[:18].rjust(18)) summary[env]["methods"][m] = entry print(f"{LABEL.get(m,m):22s} {len(runs):2d} " + " ".join(cells)) print(" * = p<0.05 (Welch) vs ST-GFN") with open(args.save, "w") as f: json.dump(summary, f, indent=2) print(f"\nwrote {args.save}")