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10b77b6 | 1 2 3 4 5 6 7 8 9 10 11 12 | # Source Data
Source Data.xlsx contains the displayed matrices for Supplementary Tables 1–19 and the supporting figure and experimental data identified in its Coverage sheet. Display precision and experimental details are distinguished within the workbook.
Figure 4a–b values are provided at figure display precision (percent; two decimal places). Figure 4c includes the four species embeddings and PCA coordinates, with plotted jitter stored separately; the calculation uses centered, unscaled full SVD and the sign convention matching the saved plot. The variance ratios are 0.38407293 and 0.3519824147; plotted jitter uses default_rng(42), SD 0.015.
Figure 5g includes 1,536 recomputed correlations verified against the saved main and inset SVG vertices (maximum absolute differences 1.19e-7 and 2.39e-7, respectively). The original gates[10][1:] indexing is preserved: plot_index maps to gate_row = plot_index + 1; the final row corresponds to the appended species token. The inset comprises plot indices 568–967. The checkpoint embeddings for Figure 4c and layer-10 gates for Figure 5g are recomputed/re-extracted data, not historical array exports.
Figure 4d retains the manuscript panel; complete UMAP coordinates are not included. BrowserRegions and BrowserTracks provide the displayed regions, alignment summaries and track-source identifiers for Figures 4e–g and 5h; they do not contain basewise browser signal tracks. Track documentation retrieval dates do not identify the original screenshot dates.
The BEND sheet contains reported aggregate results, not individual-seed outputs. Fusion summaries average shuffle seeds within tissue before summarizing across 49 tissues. TSS-matched analyses retain both mean and flattened features; the primary manuscript and Response use the mean representation.
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