afg1 commited on
Commit
cfd6454
·
verified ·
1 Parent(s): e00e6dc

Upload README.md with huggingface_hub

Browse files
Files changed (1) hide show
  1. README.md +72 -0
README.md ADDED
@@ -0,0 +1,72 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ language: rna
3
+ license: cc0-1.0
4
+ tags:
5
+ - Biology
6
+ - ncRNA
7
+ size_categories:
8
+ - 10M<n<100M
9
+ task_categories:
10
+ - text-generation
11
+ - fill-mask
12
+ task_ids:
13
+ - language-modeling
14
+ - masked-language-modeling
15
+ pretty_name: RNAcentral
16
+ ---
17
+
18
+ # RNAcentral Release 27
19
+ This is an official HuggingFace version of the RNAcentral Release 27 available at https://rnacentral.org/
20
+
21
+ Included in this dataset are:
22
+ - ncRNA sequences for 46,210,324 sequences from our member databases
23
+
24
+ # Using the data
25
+ All RNAcentral data is provided with a CC-0 license, so you are free to do as you with with it.
26
+
27
+ If you do make use of our data, please consider citing our paper: https://doi.org/10.1093/nar/gkaf1329
28
+
29
+ ## Detailed database versions
30
+ As part of our releases, we import updates from our expert member databases. Here is the detailed breakdown of
31
+ database versions for all those that have been updated this time around.
32
+
33
+ # New databases
34
+ JaponicusDB date imported 2026-06-23
35
+ CIRCpedia v3
36
+ circAtlas 3.0
37
+ Sci-ModoM (via MODOMICS) v4.0.2
38
+ mirtronDB 2.0
39
+
40
+
41
+ # Database updates
42
+ These databases were updated in this release to the version stated below:
43
+
44
+ ENA 2025-03-06 -> 2026-05-15
45
+ Ensembl 113 -> 115
46
+ Ensembl Fungi 60 -> 62
47
+ Ensembl Metazoa 60 -> 62
48
+ Ensembl Plants 60 -> 62
49
+ Ensembl Protists 60 -> 62
50
+ Ensembl/GENCODE human 47/mouse M34 -> human 49/mouse M38
51
+ Expression Atlas 2025-04-01 -> 2026-06-23
52
+ FlyBase FB2025_01 -> FB2026_01
53
+ GeneCards 5.23 -> 5.26
54
+ HGNC 2025-03-06 -> 2026-04-28
55
+ IntAct 2024-11-05 -> 2026-04-13
56
+ MalaCards 5.23 -> 5.26
57
+ PDBe 2024-11-05 -> 2026-04-29
58
+ PomBase 2024-11-05 -> 2026-04-28
59
+ QuickGo 2024-11-05 -> 2026-04-13
60
+ RefSeq 2025-03-06 -> 2026-03-25 (v235)
61
+ SGD 2025-03-06 -> 2026-03-26
62
+ WormBase 2025-03-06 -> 2026-05-15
63
+ ZFIN 2024-11-05 -> 2026-03-27
64
+ TAIR 10 -> 12
65
+ gtRNAdb 21 -> 22
66
+ RGD March 2018 -> 2026-04-28
67
+ SILVA 138.1 -> 138.2
68
+ MGNIFY 2025-03-06 -> 2026-04-13
69
+ MODOMICS 2024 -> 2025
70
+ EVLNCRNAS 2.0 -> 3.0
71
+ REDIportal 2.0 -> 3.0
72
+