| { |
| "commands": { |
| "cluster": [ |
| "/home/ubuntu/av/bin/mmseqs", |
| "cluster", |
| "/home/ubuntu/av/vocab/mmseqs/sequence_db", |
| "/home/ubuntu/av/vocab/mmseqs/cluster_db", |
| "/home/ubuntu/av/vocab/mmseqs/tmp", |
| "--min-seq-id", |
| "0.30", |
| "-c", |
| "0.50", |
| "--cov-mode", |
| "0", |
| "--alignment-mode", |
| "3", |
| "--cluster-mode", |
| "0", |
| "--single-step-clustering", |
| "1", |
| "--cluster-reassign", |
| "1", |
| "-s", |
| "7.5", |
| "--max-seqs", |
| "20000", |
| "--threads", |
| "60", |
| "--split-memory-limit", |
| "450G" |
| ], |
| "createdb": [ |
| "/home/ubuntu/av/bin/mmseqs", |
| "createdb", |
| "/home/ubuntu/av/data/uniprot_sprot.fasta.gz", |
| "/home/ubuntu/av/vocab/mmseqs/sequence_db" |
| ], |
| "createtsv": [ |
| "/home/ubuntu/av/bin/mmseqs", |
| "createtsv", |
| "/home/ubuntu/av/vocab/mmseqs/sequence_db", |
| "/home/ubuntu/av/vocab/mmseqs/sequence_db", |
| "/home/ubuntu/av/vocab/mmseqs/cluster_db", |
| "/home/ubuntu/av/vocab/mmseqs/clusters.tsv" |
| ] |
| }, |
| "inputs": { |
| "accession_count": 575503, |
| "accession_sequences_sha256": "94d46deefd82c66a0f49f8cf7f56da7ed8caa515dcdb88a818806939562ad92d", |
| "accessions_sha256": "824e1438cb1cb25583d0359491f53630ec24e76de96b92c92a0b6845b3477abb", |
| "fasta_path": "/home/ubuntu/av/data/uniprot_sprot.fasta.gz", |
| "fasta_sha256": "b774748a050fd3de0bf2ad49b359ed59a2c2b02c89df3fe0679fafa446751794" |
| }, |
| "outputs": { |
| "memberships_path": "/home/ubuntu/av/vocab/mmseqs/clusters.tsv", |
| "memberships_sha256": "bb7d5f36e991ba8be0b3c236f4408d69fca214f65ab27ba7cfabce424730afba" |
| }, |
| "parameters": { |
| "alignment_mode": 3, |
| "binary": "/home/ubuntu/av/bin/mmseqs", |
| "cluster_mode": 0, |
| "cluster_reassign": true, |
| "coverage_mode": 0, |
| "expected_version": "eec9c354be4276d2373996af2e50808b1390d527", |
| "max_sequences": 20000, |
| "min_coverage": 0.5, |
| "min_sequence_identity": 0.3, |
| "sensitivity": 7.5, |
| "single_step_clustering": true, |
| "split_memory_limit": "450G", |
| "threads": 60 |
| }, |
| "schema_version": "annotation-vocabulary-mmseqs-run-manifest-v2", |
| "tool": { |
| "binary_path": "/home/ubuntu/av/bin/mmseqs", |
| "binary_sha256": "6e532c0b639337d070524bf36266b286b59027d487075136d4b8bbe9cf96d7a2", |
| "name": "MMseqs2", |
| "version": "eec9c354be4276d2373996af2e50808b1390d527" |
| } |
| } |
|
|
