Dataset_id	Raw_file_name	MZML_file_name	#Msalign_files	#MS/MS_spectra	#PrSM_ids	#Proteoform_ids	#Protein_ids	Species	Instrument	Dissociation	Sample	Separation	Cysteine_protection	FAIMS
PXD019792	191018_Mmazei_BR1-3_1_ETHCD_5sec.raw	191018_Mmazei_BR1-3_1_ETHCD_5sec.mzML	1	2211	59	38	17	M. mazei	Orbitrap Fusion Lumos	EThcD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_BR1-3_1_HCD_5sec.raw	191018_Mmazei_BR1-3_1_HCD_5sec.mzML	1	2472	134	60	24	M. mazei	Orbitrap Fusion Lumos	HCD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_BR1-3_2_ETHCD_5sec.raw	191018_Mmazei_BR1-3_2_ETHCD_5sec.mzML	1	2374	203	125	39	M. mazei	Orbitrap Fusion Lumos	EThcD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_BR1-3_2_HCD_5sec.raw	191018_Mmazei_BR1-3_2_HCD_5sec.mzML	1	2544	213	64	23	M. mazei	Orbitrap Fusion Lumos	HCD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_BR1-3_3_ETHCD_5sec.raw	191018_Mmazei_BR1-3_3_ETHCD_5sec.mzML	1	3802	1378	471	79	M. mazei	Orbitrap Fusion Lumos	EThcD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_BR1-3_3_HCD_5sec.raw	191018_Mmazei_BR1-3_3_HCD_5sec.mzML	1	4337	933	259	65	M. mazei	Orbitrap Fusion Lumos	HCD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_BR2-2_1_ETHCD_5sec.raw	191018_Mmazei_BR2-2_1_ETHCD_5sec.mzML	1	2342	48	24	14	M. mazei	Orbitrap Fusion Lumos	EThcD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_BR2-2_1_HCD_5sec.raw	191018_Mmazei_BR2-2_1_HCD_5sec.mzML	1	2498	57	28	17	M. mazei	Orbitrap Fusion Lumos	HCD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_BR2-2_2_ETHCD_5sec.raw	191018_Mmazei_BR2-2_2_ETHCD_5sec.mzML	1	1938	52	15	9	M. mazei	Orbitrap Fusion Lumos	EThcD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_BR2-2_2_HCD_5sec.raw	191018_Mmazei_BR2-2_2_HCD_5sec.mzML	1	2127	63	24	16	M. mazei	Orbitrap Fusion Lumos	HCD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_BR2-2_3_ETHCD_5sec.raw	191018_Mmazei_BR2-2_3_ETHCD_5sec.mzML	1	3161	1046	267	49	M. mazei	Orbitrap Fusion Lumos	EThcD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_BR2-2_3_HCD_5sec.raw	191018_Mmazei_BR2-2_3_HCD_5sec.mzML	1	3503	660	188	48	M. mazei	Orbitrap Fusion Lumos	HCD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_BR3-4_1_ETHCD_5sec.raw	191018_Mmazei_BR3-4_1_ETHCD_5sec.mzML	1	2579	166	142	50	M. mazei	Orbitrap Fusion Lumos	EThcD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_BR3-4_1_HCD_5sec.raw	191018_Mmazei_BR3-4_1_HCD_5sec.mzML	1	2785	342	205	55	M. mazei	Orbitrap Fusion Lumos	HCD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_BR3-4_2_ETHCD_5sec.raw	191018_Mmazei_BR3-4_2_ETHCD_5sec.mzML	1	2477	285	207	48	M. mazei	Orbitrap Fusion Lumos	EThcD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_BR3-4_2_HCD_5sec.raw	191018_Mmazei_BR3-4_2_HCD_5sec.mzML	1	2639	268	139	47	M. mazei	Orbitrap Fusion Lumos	HCD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_BR3-4_3_ETHCD_5sec.raw	191018_Mmazei_BR3-4_3_ETHCD_5sec.mzML	1	3880	1425	465	79	M. mazei	Orbitrap Fusion Lumos	EThcD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_BR3-4_3_HCD_5sec.raw	191018_Mmazei_BR3-4_3_HCD_5sec.mzML	1	4275	1045	319	76	M. mazei	Orbitrap Fusion Lumos	HCD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_BR4-1_1_ETHCD_5sec.raw	191018_Mmazei_BR4-1_1_ETHCD_5sec.mzML	1	2781	361	155	52	M. mazei	Orbitrap Fusion Lumos	EThcD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_BR4-1_1_HCD_5sec.raw	191018_Mmazei_BR4-1_1_HCD_5sec.mzML	1	2959	366	199	51	M. mazei	Orbitrap Fusion Lumos	HCD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_BR4-1_2_ETHCD_5sec.raw	191018_Mmazei_BR4-1_2_ETHCD_5sec.mzML	1	2312	324	115	36	M. mazei	Orbitrap Fusion Lumos	EThcD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_BR4-1_2_HCD_5sec.raw	191018_Mmazei_BR4-1_2_HCD_5sec.mzML	1	2419	200	63	24	M. mazei	Orbitrap Fusion Lumos	HCD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_BR4-1_3_ETHCD_5sec.raw	191018_Mmazei_BR4-1_3_ETHCD_5sec.mzML	1	3918	1524	486	73	M. mazei	Orbitrap Fusion Lumos	EThcD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_BR4-1_3_HCD_5sec.raw	191018_Mmazei_BR4-1_3_HCD_5sec.mzML	1	4232	920	285	66	M. mazei	Orbitrap Fusion Lumos	HCD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_R2_12_ETHCD_5sec.raw	191018_Mmazei_R2_12_ETHCD_5sec.mzML	1	2541	133	98	33	M. mazei	Orbitrap Fusion Lumos	EThcD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_R2_12_HCD_5sec.raw	191018_Mmazei_R2_12_HCD_5sec.mzML	1	2719	289	154	33	M. mazei	Orbitrap Fusion Lumos	HCD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_R2_3_ETHCD_5sec.raw	191018_Mmazei_R2_3_ETHCD_5sec.mzML	1	2190	85	48	21	M. mazei	Orbitrap Fusion Lumos	EThcD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_R2_3_HCD_5sec.raw	191018_Mmazei_R2_3_HCD_5sec.mzML	1	2561	164	69	23	M. mazei	Orbitrap Fusion Lumos	HCD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191018_Mmazei_R2_4_HCD_5sec.raw	191018_Mmazei_R2_4_HCD_5sec.mzML	1	3977	763	201	51	M. mazei	Orbitrap Fusion Lumos	HCD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191025_Mmazei_BR1-3_3_Red_ETHCD_5sec.raw	191025_Mmazei_BR1-3_3_Red_ETHCD_5sec.mzML	1	2314	734	253	67	M. mazei	Orbitrap Fusion Lumos	EThcD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191025_Mmazei_BR1-3_3_Red_HCD_5sec.raw	191025_Mmazei_BR1-3_3_Red_HCD_5sec.mzML	1	3533	1011	293	74	M. mazei	Orbitrap Fusion Lumos	HCD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191025_Mmazei_BR2-2_3_Red_HCD_5sec.raw	191025_Mmazei_BR2-2_3_Red_HCD_5sec.mzML	1	3069	692	163	49	M. mazei	Orbitrap Fusion Lumos	HCD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191025_Mmazei_BR3-4_3_Red_HCD_5sec.raw	191025_Mmazei_BR3-4_3_Red_HCD_5sec.mzML	1	3510	974	270	77	M. mazei	Orbitrap Fusion Lumos	HCD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191025_Mmazei_BR4-1_3_Red_HCD_5sec.raw	191025_Mmazei_BR4-1_3_Red_HCD_5sec.mzML	1	3309	1075	291	74	M. mazei	Orbitrap Fusion Lumos	HCD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191025_Mmazei_R2_4_Red_ETHCD_5sec.raw	191025_Mmazei_R2_4_Red_ETHCD_5sec.mzML	1	2486	780	147	51	M. mazei	Orbitrap Fusion Lumos	EThcD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191025_Mmazei_R2_4_Red_HCD_5sec.raw	191025_Mmazei_R2_4_Red_HCD_5sec.mzML	1	3221	949	308	68	M. mazei	Orbitrap Fusion Lumos	HCD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191216_Mmazei_BR1-4_noSCX_EThcD_5sec.raw	191216_Mmazei_BR1-4_noSCX_EThcD_5sec.mzML	1	3710	521	186	64	M. mazei	Orbitrap Fusion Lumos	EThcD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191216_Mmazei_BR1-4_noSCX_HCD_All.raw	191216_Mmazei_BR1-4_noSCX_HCD_All.mzML	1	5048	435	170	58	M. mazei	Orbitrap Fusion Lumos	HCD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191216_Mmazei_BR2-1_noSCX_EThcD_5sec_20191216180254.raw	191216_Mmazei_BR2-1_noSCX_EThcD_5sec_20191216180254.mzML	1	3593	395	168	66	M. mazei	Orbitrap Fusion Lumos	EThcD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191216_Mmazei_BR2-1_noSCX_HCD_All.raw	191216_Mmazei_BR2-1_noSCX_HCD_All.mzML	1	4842	281	122	51	M. mazei	Orbitrap Fusion Lumos	HCD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191216_Mmazei_BR4-4_noSCX_EThcD_5sec.raw	191216_Mmazei_BR4-4_noSCX_EThcD_5sec.mzML	1	3704	485	179	59	M. mazei	Orbitrap Fusion Lumos	EThcD	Archaea Methanosarcina mazei	RPLC	None	No
PXD019792	191216_Mmazei_BR4-4_noSCX_HCD_All.raw	191216_Mmazei_BR4-4_noSCX_HCD_All.mzML	1	4843	384	198	59	M. mazei	Orbitrap Fusion Lumos	HCD	Archaea Methanosarcina mazei	RPLC	None	No