"""Build the vector index. Pipeline: load Acibadem articles -> sample -> chunk -> embed -> store in ChromaDB and export a Hugging Face-ready parquet (url, chunk_text, chunk_vector, plus parent/meta columns). Run: python src/build_index.py """ import hashlib import shutil import pandas as pd import config as C from chunking import chunk_text from embedder import embed_documents, get_tokenizer def _load_articles() -> pd.DataFrame: src = f"hf://datasets/{C.DATASET_REPO}/{C.HOSPITAL_FILE}" print(f"Loading {src} ...") df = pd.read_parquet(src) df = df[["url", "title", "text"]].copy() df["text"] = df["text"].astype(str) df = df[df["text"].str.len() >= C.MIN_ARTICLE_CHARS] df = df.dropna(subset=["url", "text"]).drop_duplicates(subset=["url"]) print(f" {len(df)} eligible articles (>= {C.MIN_ARTICLE_CHARS} chars)") sampled = df.sample(n=min(C.N_ARTICLES, len(df)), random_state=C.RANDOM_SEED) sampled = sampled.reset_index(drop=True) print(f" sampled {len(sampled)} articles (seed={C.RANDOM_SEED})") return sampled def _parent_id(url: str) -> str: return hashlib.md5(url.encode("utf-8")).hexdigest()[:12] def build_chunks(articles: pd.DataFrame) -> pd.DataFrame: count_tokens = get_tokenizer() rows = [] for _, art in articles.iterrows(): pid = _parent_id(art["url"]) pieces = chunk_text( art["text"], count_tokens, max_tokens=C.MAX_TOKENS_PER_CHUNK, overlap_tokens=C.CHUNK_OVERLAP_TOKENS, min_tokens=C.MIN_CHUNK_TOKENS, ) for i, piece in enumerate(pieces): rows.append( { "chunk_id": f"{pid}_{i:03d}", "parent_id": pid, "url": art["url"], "title": art["title"], "__source": C.SOURCE_NAME, "chunk_index": i, "n_tokens": count_tokens(piece), "chunk_text": piece, } ) chunks = pd.DataFrame(rows) print( f" {len(chunks)} chunks from {articles.shape[0]} articles " f"(avg {len(chunks)/max(1,articles.shape[0]):.1f} chunks/article, " f"avg {chunks['n_tokens'].mean():.0f} tokens/chunk)" ) return chunks def embed_and_store(chunks: pd.DataFrame) -> pd.DataFrame: import chromadb texts = chunks["chunk_text"].tolist() print(f"Embedding {len(texts)} chunks with {C.EMBED_MODEL} ...") vectors = embed_documents(texts) assert vectors.shape[1] == C.EMBED_DIM, vectors.shape chunks = chunks.copy() chunks["chunk_vector"] = [v.tolist() for v in vectors] # --- ChromaDB (rebuild fresh) --- if C.CHROMA_DIR.exists(): shutil.rmtree(C.CHROMA_DIR) client = chromadb.PersistentClient(path=str(C.CHROMA_DIR)) coll = client.create_collection( name=C.COLLECTION_NAME, metadata={"hnsw:space": C.DISTANCE_SPACE} ) B = 512 for s in range(0, len(chunks), B): part = chunks.iloc[s : s + B] coll.add( ids=part["chunk_id"].tolist(), embeddings=[v for v in vectors[s : s + B]], documents=part["chunk_text"].tolist(), metadatas=[ { "url": rec["url"], "title": rec["title"], "parent_id": rec["parent_id"], "__source": rec["__source"], "chunk_index": int(rec["chunk_index"]), } for rec in part.to_dict("records") ], ) print(f" stored {coll.count()} vectors in ChromaDB ({C.CHROMA_DIR})") return chunks def main(): C.DATA_DIR.mkdir(exist_ok=True) articles = _load_articles() chunks = build_chunks(articles) chunks = embed_and_store(chunks) out_cols = [ "chunk_id", "parent_id", "url", "title", "__source", "chunk_index", "n_tokens", "chunk_text", "chunk_vector", ] chunks[out_cols].to_parquet(C.CHUNKS_PARQUET, index=False) print(f" wrote {C.CHUNKS_PARQUET} ({len(chunks)} rows)") print("Done.") if __name__ == "__main__": main()