Datasets:
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parquet
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< 1K
Tags:
video-language-model
egocentric-video
laboratory
wet-lab
procedural-monitoring
error-detection
License:
| #!/usr/bin/env python3 | |
| """Reference Qwen/LabOS inference runner for standardized benchmark outputs.""" | |
| from __future__ import annotations | |
| import argparse | |
| import json | |
| import os | |
| import subprocess | |
| import sys | |
| from datetime import datetime, timezone | |
| from pathlib import Path | |
| from typing import Any | |
| import torch | |
| from peft import PeftModel | |
| from qwen_vl_utils import process_vision_info | |
| from transformers import AutoConfig, AutoProcessor, Qwen2_5_VLForConditionalGeneration | |
| from lsvbench.io import BENCHMARK_ROOT, OutputLayout, merge_shards, write_json, write_jsonl | |
| from lsvbench.tasks import get_task | |
| DEFAULT_LSV_ROOT = BENCHMARK_ROOT | |
| MODEL_ALIASES = { | |
| "labos-vlm7b": "Qwen/Qwen2.5-VL-7B-Instruct", | |
| "labos-vlm-7b": "Qwen/Qwen2.5-VL-7B-Instruct", | |
| "qwen25-7b": "Qwen/Qwen2.5-VL-7B-Instruct", | |
| "qwen2.5-7b": "Qwen/Qwen2.5-VL-7B-Instruct", | |
| } | |
| ADAPTER_ALIASES = { | |
| "labos-vlm7b": "cong-lab/labos-vlm-7b", | |
| "labos-vlm-7b": "cong-lab/labos-vlm-7b", | |
| } | |
| MODEL_FAMILY_ALIASES = { | |
| "auto": "auto", | |
| "qwen25": "qwen2.5-vl", | |
| "qwen25-vl": "qwen2.5-vl", | |
| "qwen2.5": "qwen2.5-vl", | |
| "qwen2.5-vl": "qwen2.5-vl", | |
| } | |
| QWEN25_VL_MODEL_TYPES = {"qwen2_5_vl"} | |
| QWEN25_VL_ARCHITECTURES = {"Qwen2_5_VLForConditionalGeneration"} | |
| def parse_gpus(value: str) -> list[str]: | |
| text = value.strip() | |
| if not text: | |
| return ["0"] | |
| if "-" in text and "," not in text: | |
| start, end = [int(part) for part in text.split("-", 1)] | |
| return [str(idx) for idx in range(start, end + 1)] | |
| return [part.strip() for part in text.split(",") if part.strip()] | |
| def resolve_model(value: str) -> str: | |
| return MODEL_ALIASES.get(value, value) | |
| def normalize_model_family(value: str) -> str: | |
| family = MODEL_FAMILY_ALIASES.get(value.strip().lower()) | |
| if family is None: | |
| supported = ", ".join(sorted(MODEL_FAMILY_ALIASES)) | |
| raise ValueError(f"Unsupported --model-family {value!r}. Supported values: {supported}") | |
| return family | |
| def detect_model_family(model_name: str) -> str: | |
| config = AutoConfig.from_pretrained(model_name, trust_remote_code=True) | |
| model_type = str(getattr(config, "model_type", "") or "") | |
| architectures = {str(item) for item in (getattr(config, "architectures", None) or [])} | |
| if model_type in QWEN25_VL_MODEL_TYPES or architectures & QWEN25_VL_ARCHITECTURES: | |
| return "qwen2.5-vl" | |
| detail = f"model_type={model_type!r}, architectures={sorted(architectures)!r}" | |
| raise ValueError( | |
| "Could not infer a supported model family from model config " | |
| f"for {model_name!r} ({detail}). Only qwen2.5-vl is currently implemented. " | |
| "Pass --model-family qwen2.5-vl if this is a compatible Qwen2.5-VL checkpoint." | |
| ) | |
| def resolve_model_family(value: str, model_name: str) -> str: | |
| family = normalize_model_family(value) | |
| return detect_model_family(model_name) if family == "auto" else family | |
| def adapter_value(value: str | None) -> str | None: | |
| if value is None: | |
| return None | |
| text = str(value).strip() | |
| return None if not text or text.lower() in {"none", "null", "base"} else text | |
| def resolve_adapter(model_arg: str, adapter_arg: str | None) -> str | None: | |
| explicit = adapter_value(adapter_arg) | |
| return explicit if explicit is not None else ADAPTER_ALIASES.get(model_arg) | |
| def load_model(args: argparse.Namespace) -> tuple[Any, Any]: | |
| model_name = resolve_model(args.model) | |
| model_family = resolve_model_family(args.model_family, model_name) | |
| if model_family != "qwen2.5-vl": | |
| raise ValueError(f"Unsupported model family {model_family!r}. Only qwen2.5-vl is currently implemented.") | |
| processor = AutoProcessor.from_pretrained(model_name, trust_remote_code=True) | |
| model = Qwen2_5_VLForConditionalGeneration.from_pretrained( | |
| model_name, | |
| torch_dtype=torch.bfloat16, | |
| device_map={"": "cuda:0"}, | |
| attn_implementation=args.attn_impl, | |
| trust_remote_code=True, | |
| ) | |
| adapter = resolve_adapter(args.model, args.adapter) | |
| if adapter is not None: | |
| model = PeftModel.from_pretrained(model, adapter) | |
| model.eval() | |
| return model, processor | |
| def normalize_video_kwargs(video_kwargs: dict[str, Any], batch_size: int) -> dict[str, Any]: | |
| out = dict(video_kwargs) | |
| for key, value in list(out.items()): | |
| if isinstance(value, list) and len(value) == 1 and batch_size == 1: | |
| out[key] = value[0] | |
| return out | |
| def video_settings_for_task(task_name: str, args: argparse.Namespace) -> dict[str, Any]: | |
| if task_name == "pmd": | |
| return { | |
| "fps": args.pmd_fps, | |
| "min_frames": args.min_frames, | |
| "max_frames": args.pmd_max_frames, | |
| "min_pixels": args.min_pixels, | |
| "max_pixels": args.pmd_max_pixels, | |
| } | |
| return { | |
| "fps": args.fps, | |
| "min_frames": args.min_frames, | |
| "max_frames": args.max_frames, | |
| "min_pixels": args.min_pixels, | |
| "max_pixels": args.max_pixels, | |
| } | |
| def prompt_for_row(task_name: str, row: dict[str, Any], args: argparse.Namespace) -> str: | |
| if task_name == "pmd": | |
| return Path(args.pmd_prompt).read_text(encoding="utf-8").strip() | |
| return str(row["prompt"]) | |
| def build_messages(task_name: str, row: dict[str, Any], args: argparse.Namespace) -> list[dict[str, Any]]: | |
| video = { | |
| "type": "video", | |
| "video": row["_video_abs"], | |
| **video_settings_for_task(task_name, args), | |
| } | |
| if task_name != "pmd": | |
| video["video_start"] = float(row["video_start"]) | |
| video["video_end"] = float(row["video_end"]) | |
| return [ | |
| { | |
| "role": "user", | |
| "content": [ | |
| video, | |
| {"type": "text", "text": prompt_for_row(task_name, row, args)}, | |
| ], | |
| } | |
| ] | |
| def generate_batch(model: Any, processor: Any, task_name: str, rows: list[dict[str, Any]], args: argparse.Namespace) -> list[str]: | |
| batch_messages = [build_messages(task_name, row, args) for row in rows] | |
| texts = [processor.apply_chat_template(messages, tokenize=False, add_generation_prompt=True) for messages in batch_messages] | |
| image_inputs, video_inputs, video_kwargs = process_vision_info(batch_messages, return_video_kwargs=True) | |
| video_kwargs = normalize_video_kwargs(video_kwargs, len(rows)) | |
| inputs = processor( | |
| text=texts, | |
| images=image_inputs, | |
| videos=video_inputs, | |
| padding=True, | |
| return_tensors="pt", | |
| **video_kwargs, | |
| ).to(model.device) | |
| with torch.inference_mode(): | |
| generated = model.generate( | |
| **inputs, | |
| max_new_tokens=args.pmd_max_new_tokens if task_name == "pmd" else args.max_new_tokens, | |
| do_sample=False, | |
| temperature=None, | |
| top_p=None, | |
| ) | |
| prompt_lens = inputs["attention_mask"].sum(dim=1).tolist() | |
| decoded: list[str] = [] | |
| for idx, prompt_len in enumerate(prompt_lens): | |
| text = processor.decode( | |
| generated[idx, int(prompt_len) :], | |
| skip_special_tokens=True, | |
| clean_up_tokenization_spaces=False, | |
| ) | |
| decoded.append(text.strip()) | |
| return decoded | |
| def safe_generate_batch(model: Any, processor: Any, task_name: str, rows: list[dict[str, Any]], args: argparse.Namespace) -> list[tuple[str, str | None]]: | |
| try: | |
| return [(text, None) for text in generate_batch(model, processor, task_name, rows, args)] | |
| except Exception as exc: | |
| if torch.cuda.is_available(): | |
| torch.cuda.empty_cache() | |
| if len(rows) == 1: | |
| return [("", f"{type(exc).__name__}: {exc}")] | |
| outputs: list[tuple[str, str | None]] = [] | |
| for row in rows: | |
| outputs.extend(safe_generate_batch(model, processor, task_name, [row], args)) | |
| return outputs | |
| def chunks(rows: list[dict[str, Any]], size: int) -> list[list[dict[str, Any]]]: | |
| return [rows[idx : idx + size] for idx in range(0, len(rows), size)] | |
| def record_for_output(task_name: str, row: dict[str, Any], raw: str, error: str | None, args: argparse.Namespace) -> dict[str, Any]: | |
| keep = {key: value for key, value in row.items() if not key.startswith("_")} | |
| keep.update( | |
| { | |
| "task": task_name, | |
| "raw_response": raw, | |
| "error": error, | |
| "shard_index": args.shard_index, | |
| "num_shards": args.num_shards, | |
| } | |
| ) | |
| return keep | |
| def run_worker(args: argparse.Namespace) -> None: | |
| os.environ.setdefault("FORCE_QWENVL_VIDEO_READER", "decord") | |
| task = get_task(args.task) | |
| video_root = BENCHMARK_ROOT if args.task == "pmd" else args.lsv_root | |
| rows = task.load_examples( | |
| benchmark_root=BENCHMARK_ROOT, | |
| manifest_path=args.manifest, | |
| video_root=video_root, | |
| num_shards=args.num_shards, | |
| shard_index=args.shard_index, | |
| limit=args.limit, | |
| ) | |
| model, processor = load_model(args) | |
| layout = OutputLayout(args.output) | |
| result_path = layout.shard_path(args.task, args.shard_index) | |
| result_path.parent.mkdir(parents=True, exist_ok=True) | |
| records: list[dict[str, Any]] = [] | |
| batch_size = args.pmd_batch_size if args.task == "pmd" else args.batch_size | |
| for batch in chunks(rows, batch_size): | |
| generated = safe_generate_batch(model, processor, args.task, batch, args) | |
| for row, (raw, error) in zip(batch, generated, strict=True): | |
| record = record_for_output(args.task, row, raw, error, args) | |
| records.append(record) | |
| print(json.dumps({"task": args.task, "id": row.get("eval_id") or row.get("video_id"), "error": error}), flush=True) | |
| write_jsonl(result_path, records) | |
| def launch_workers(args: argparse.Namespace) -> None: | |
| gpus = parse_gpus(args.gpus) | |
| args.output.mkdir(parents=True, exist_ok=True) | |
| write_json( | |
| args.output / "run_config.json", | |
| { | |
| "model": resolve_model(args.model), | |
| "model_arg": args.model, | |
| "model_family": resolve_model_family(args.model_family, resolve_model(args.model)), | |
| "adapter": resolve_adapter(args.model, args.adapter), | |
| "tasks": args.tasks.split(","), | |
| "created_at": datetime.now(timezone.utc).isoformat(), | |
| "gpus": gpus, | |
| "fps": args.fps, | |
| "max_frames": args.max_frames, | |
| "max_pixels": args.max_pixels, | |
| "pmd_fps": args.pmd_fps, | |
| "pmd_max_frames": args.pmd_max_frames, | |
| "pmd_max_pixels": args.pmd_max_pixels, | |
| }, | |
| ) | |
| for task_name in [task.strip() for task in args.tasks.split(",") if task.strip()]: | |
| procs: list[subprocess.Popen[Any]] = [] | |
| for shard_index, gpu in enumerate(gpus): | |
| cmd = [ | |
| sys.executable, | |
| str(Path(__file__).resolve()), | |
| "--worker", | |
| "--task", | |
| task_name, | |
| "--model", | |
| args.model, | |
| "--model-family", | |
| args.model_family, | |
| "--output", | |
| str(args.output), | |
| "--gpus", | |
| gpu, | |
| "--num-shards", | |
| str(len(gpus)), | |
| "--shard-index", | |
| str(shard_index), | |
| "--batch-size", | |
| str(args.batch_size), | |
| "--pmd-batch-size", | |
| str(args.pmd_batch_size), | |
| "--max-new-tokens", | |
| str(args.max_new_tokens), | |
| "--pmd-max-new-tokens", | |
| str(args.pmd_max_new_tokens), | |
| "--attn-impl", | |
| args.attn_impl, | |
| "--lsv-root", | |
| str(args.lsv_root), | |
| ] | |
| effective_adapter = resolve_adapter(args.model, args.adapter) | |
| if effective_adapter: | |
| cmd.extend(["--adapter", effective_adapter]) | |
| if args.limit is not None: | |
| cmd.extend(["--limit", str(args.limit)]) | |
| env = os.environ.copy() | |
| env["CUDA_VISIBLE_DEVICES"] = gpu | |
| env.setdefault("PYTHONPATH", str(BENCHMARK_ROOT)) | |
| env["PYTHONPATH"] = f"{BENCHMARK_ROOT}:{env['PYTHONPATH']}" | |
| procs.append(subprocess.Popen(cmd, cwd=str(BENCHMARK_ROOT), env=env)) | |
| failures = [proc.wait() for proc in procs] | |
| if any(code != 0 for code in failures): | |
| raise SystemExit(f"Task {task_name} failed with exit codes: {failures}") | |
| merge_shards(OutputLayout(args.output).task_dir(task_name), sort_key=get_task(task_name).sort_key) | |
| def main() -> None: | |
| parser = argparse.ArgumentParser(description=__doc__) | |
| parser.add_argument("--model", required=True, help="Base or merged model as a Hugging Face repo ID, local path, or alias such as qwen25-7b.") | |
| parser.add_argument( | |
| "--model-family", | |
| default="auto", | |
| help="Inference backend to use: auto or qwen2.5-vl. Auto reads the model config from a Hugging Face repo ID or local path.", | |
| ) | |
| parser.add_argument("--adapter", help="Optional PEFT/LoRA adapter as a Hugging Face repo ID or local path.") | |
| parser.add_argument("--output", type=Path, required=True) | |
| parser.add_argument("--tasks", default="monitoring_step,monitor_next_step,pmd") | |
| parser.add_argument("--task", choices=sorted(["monitoring_step", "monitor_next_step", "pmd"])) | |
| parser.add_argument("--manifest", type=Path) | |
| parser.add_argument("--gpus", default="0") | |
| parser.add_argument("--worker", action="store_true") | |
| parser.add_argument("--num-shards", type=int, default=1) | |
| parser.add_argument("--shard-index", type=int, default=0) | |
| parser.add_argument("--limit", type=int) | |
| parser.add_argument("--lsv-root", type=Path, default=DEFAULT_LSV_ROOT) | |
| parser.add_argument("--batch-size", type=int, default=4) | |
| parser.add_argument("--pmd-batch-size", type=int, default=4) | |
| parser.add_argument("--fps", type=float, default=2.0) | |
| parser.add_argument("--pmd-fps", type=float, default=8.0) | |
| parser.add_argument("--min-frames", type=int, default=4) | |
| parser.add_argument("--max-frames", type=int, default=128) | |
| parser.add_argument("--pmd-max-frames", type=int, default=512) | |
| parser.add_argument("--min-pixels", type=int, default=50176) | |
| parser.add_argument("--max-pixels", type=int, default=100352) | |
| parser.add_argument("--pmd-max-pixels", type=int, default=200704) | |
| parser.add_argument("--max-new-tokens", type=int, default=2048) | |
| parser.add_argument("--pmd-max-new-tokens", type=int, default=64) | |
| parser.add_argument("--attn-impl", default="flash_attention_3") | |
| parser.add_argument("--pmd-prompt", type=Path, default=BENCHMARK_ROOT / "lsvbench" / "tasks" / "prompts" / "pmd.md") | |
| args = parser.parse_args() | |
| if args.worker: | |
| if not args.task: | |
| raise SystemExit("--worker requires --task") | |
| run_worker(args) | |
| else: | |
| launch_workers(args) | |
| if __name__ == "__main__": | |
| main() | |