#!/usr/bin/env python3 """Validation & Diagnostic Visualization for Snakebite Envenomation Dataset.""" import pandas as pd import numpy as np import matplotlib.pyplot as plt import os SCENARIOS = ['referral_hospital', 'district_hospital', 'rural_health_centre'] def load_scenarios(data_dir='data'): dfs = {} for sc in SCENARIOS: path = os.path.join(data_dir, f'snakebite_{sc}.csv') if os.path.exists(path): dfs[sc] = pd.read_csv(path) return dfs def make_report(dfs, output='validation_report.png'): fig, axes = plt.subplots(4, 2, figsize=(16, 22)) fig.suptitle('Snakebite Envenomation — Validation Report', fontsize=16, fontweight='bold', y=0.98) df = dfs.get('district_hospital', list(dfs.values())[0]) env = df[df['dry_bite'] == 0] # Panel 1: Snake species distribution ax = axes[0, 0] sp = df['snake_species'].value_counts().head(7) ax.barh(range(len(sp)), sp.values, color='#2ecc71', alpha=0.7) ax.set_yticks(range(len(sp))) ax.set_yticklabels([s.replace('_', ' ').title()[:20] for s in sp.index], fontsize=7) ax.set_xlabel('Count') ax.set_title('Snake Species Distribution (District)') # Panel 2: Envenomation syndrome ax = axes[0, 1] syn = env['envenomation_syndrome'].value_counts() syn_colors = ['#e74c3c', '#f39c12', '#9b59b6', '#3498db', '#e67e22'] ax.pie(syn.values, labels=syn.index, autopct='%1.1f%%', colors=syn_colors[:len(syn)], startangle=90, textprops={'fontsize': 8}) ax.set_title('Envenomation Syndrome (Envenomated)') # Panel 3: Antivenom & mortality across scenarios ax = axes[1, 0] x = np.arange(len(SCENARIOS)) width = 0.3 av = [dfs[sc]['antivenom_given'].mean() * 100 for sc in SCENARIOS if sc in dfs] mort = [(dfs[sc]['outcome'] == 'died').mean() * 100 for sc in SCENARIOS if sc in dfs] ax.bar(x - width/2, av, width, label='Antivenom %', color='#2ecc71', alpha=0.8) ax.bar(x + width/2, mort, width, label='Mortality %', color='#e74c3c', alpha=0.8) ax.set_xticks(x) ax.set_xticklabels(['Referral', 'District', 'Rural'], fontsize=9) ax.set_ylabel('Percentage (%)') ax.set_title('Antivenom Access vs Mortality') ax.legend(fontsize=8) # Panel 4: Time to facility ax = axes[1, 1] for i, sc in enumerate(SCENARIOS): if sc in dfs: d = dfs[sc] ax.hist(d['time_to_facility_hours'].clip(0, 48), bins=30, alpha=0.5, label=sc.replace('_', ' ').title()[:15], edgecolor='white') ax.set_xlabel('Time to Facility (hours)') ax.set_title('Time to Facility Distribution') ax.legend(fontsize=7) # Panel 5: Severity by outcome ax = axes[2, 0] sevs = ['mild', 'moderate', 'severe'] sev_colors = ['#f1c40f', '#e67e22', '#e74c3c'] died_rates = [] for sev in sevs: sub = env[env['severity'] == sev] died_rates.append((sub['outcome'] == 'died').mean() * 100 if len(sub) > 0 else 0) ax.bar(range(3), died_rates, color=sev_colors) ax.set_xticks(range(3)) ax.set_xticklabels(['Mild', 'Moderate', 'Severe']) for i, v in enumerate(died_rates): ax.text(i, v + 0.3, f'{v:.1f}%', ha='center', fontsize=10) ax.set_ylabel('Mortality (%)') ax.set_title('Mortality by Severity (District)') # Panel 6: Clinical features prevalence ax = axes[2, 1] features = ['local_swelling', 'coagulopathy', 'neurotoxicity', 'local_necrosis', 'acute_kidney_injury', 'compartment_syndrome'] labels = ['Swelling', 'Coagulopathy', 'Neurotoxicity', 'Necrosis', 'AKI', 'Compartment\nSyndrome'] rates = [env[f].mean() * 100 for f in features] feat_colors = ['#3498db', '#e74c3c', '#9b59b6', '#e67e22', '#f39c12', '#1abc9c'] ax.barh(range(len(features)), rates, color=feat_colors, alpha=0.8) ax.set_yticks(range(len(features))) ax.set_yticklabels(labels, fontsize=8) ax.set_xlabel('Prevalence (%)') ax.set_title('Clinical Features (Envenomated)') # Panel 7: Age-sex distribution ax = axes[3, 0] males = df[df['sex'] == 'M']['age_years'] females = df[df['sex'] == 'F']['age_years'] ax.hist(males, bins=20, alpha=0.6, color='#3498db', label=f'Male (n={len(males)})', edgecolor='white') ax.hist(females, bins=20, alpha=0.6, color='#e74c3c', label=f'Female (n={len(females)})', edgecolor='white') ax.set_xlabel('Age (years)') ax.set_title('Age-Sex Distribution') ax.legend(fontsize=9) # Panel 8: Bite location ax = axes[3, 1] loc = df['bite_location'].value_counts() ax.bar(range(len(loc)), loc.values, color='#3498db', alpha=0.7) ax.set_xticks(range(len(loc))) ax.set_xticklabels([l.replace('_', ' ').title() for l in loc.index], fontsize=8, rotation=30) ax.set_ylabel('Count') ax.set_title('Bite Location') plt.tight_layout(rect=[0, 0, 1, 0.97]) plt.savefig(output, dpi=150, bbox_inches='tight') print(f'Saved validation report to {output}') plt.close() if __name__ == '__main__': dfs = load_scenarios() if dfs: make_report(dfs)