#!/usr/bin/env python3 """Validation for Stroke Emergency Care Dataset.""" import pandas as pd, numpy as np, matplotlib.pyplot as plt, os, glob def load_scenarios(data_dir='data'): dfs = {} for f in sorted(glob.glob(os.path.join(data_dir, 'stroke_*.csv'))): name = os.path.basename(f).replace('.csv', '')[7:] dfs[name] = pd.read_csv(f) return dfs def main(): dfs = load_scenarios() if not dfs: return all_df = pd.concat([df.assign(scenario=n) for n, df in dfs.items()], ignore_index=True) fig, axes = plt.subplots(4, 2, figsize=(16, 20)) fig.suptitle('Stroke Emergency Care — Validation Report', fontsize=14, fontweight='bold', y=0.98) colors = {'stroke_unit_available': '#2ecc71', 'basic_stroke_care': '#f39c12', 'no_stroke_services': '#e74c3c'} labels = {'stroke_unit_available': 'Stroke Unit (SA/KE)', 'basic_stroke_care': 'Basic (KE/GH/TZ)', 'no_stroke_services': 'None (DRC/SLE)'} scenarios = list(dfs.keys()) ax = axes[0, 0] metrics = ['CT Done %', 'Thrombolysis %', 'Stroke Unit %', 'Mortality %'] for i, s in enumerate(scenarios): d = dfs[s]; vals = [d['ct_scan_done'].mean()*100, d['thrombolysis_given'].mean()*100, d['stroke_unit_admitted'].mean()*100, d['died_in_hospital'].mean()*100] ax.bar(np.arange(len(metrics))+i*0.25, vals, 0.25, label=labels.get(s,s), color=colors[s], alpha=0.8) ax.set_xticks(np.arange(len(metrics))+0.25); ax.set_xticklabels(metrics, fontsize=7); ax.set_ylabel('%'); ax.set_title('Panel 1: Key Metrics'); ax.legend(fontsize=7) ax = axes[0, 1] for i, s in enumerate(scenarios): d = dfs[s]; vals = [(d['stroke_type']=='ischemic').mean()*100, (d['stroke_type']=='hemorrhagic').mean()*100] ax.bar(np.arange(2)+i*0.25, vals, 0.25, label=labels.get(s,s), color=colors[s], alpha=0.8) ax.set_xticks(np.arange(2)+0.25); ax.set_xticklabels(['Ischemic','Hemorrhagic']); ax.set_ylabel('%'); ax.set_title('Panel 2: Stroke Type'); ax.legend(fontsize=7) ax = axes[1, 0] for s in scenarios: ax.hist(dfs[s]['onset_to_arrival_hrs'].clip(upper=72), bins=30, alpha=0.5, label=labels.get(s,s), color=colors[s], density=True) ax.axvline(4.5, color='black', linestyle='--', alpha=0.5, label='4.5hr window') ax.set_xlabel('Onset to Arrival (hours)'); ax.set_title('Panel 3: Presentation Delay'); ax.legend(fontsize=7) ax = axes[1, 1] for s in scenarios: ax.hist(dfs[s]['nihss_score'].clip(upper=35), bins=25, alpha=0.5, label=labels.get(s,s), color=colors[s], density=True) ax.set_xlabel('NIHSS Score'); ax.set_title('Panel 4: Stroke Severity'); ax.legend(fontsize=7) ax = axes[2, 0] tx = ['Aspirin', 'Anti-HTN', 'Statin', 'DVT\nProphyl', 'Dysphagia\nScreen', 'Neuro\nConsult'] for i, s in enumerate(scenarios): d = dfs[s]; vals = [d['aspirin_given'].mean()*100, d['antihypertensive_given'].mean()*100, d['statin_given'].mean()*100, d['dvt_prophylaxis'].mean()*100, d['dysphagia_screening'].mean()*100, d['neurologist_consulted'].mean()*100] ax.bar(np.arange(len(tx))+i*0.20, vals, 0.20, label=labels.get(s,s), color=colors[s], alpha=0.8) ax.set_xticks(np.arange(len(tx))+0.20); ax.set_xticklabels(tx, fontsize=5); ax.set_ylabel('%'); ax.set_title('Panel 5: Treatments'); ax.legend(fontsize=6) ax = axes[2, 1] comp = ['Aspiration\nPneumonia', 'DVT/PE', 'Seizure', 'Raised\nICP'] for i, s in enumerate(scenarios): d = dfs[s]; vals = [d['aspiration_pneumonia'].mean()*100, d['dvt_pe'].mean()*100, d['seizure'].mean()*100, d['raised_icp'].mean()*100] ax.bar(np.arange(len(comp))+i*0.25, vals, 0.25, label=labels.get(s,s), color=colors[s], alpha=0.8) ax.set_xticks(np.arange(len(comp))+0.25); ax.set_xticklabels(comp, fontsize=6); ax.set_ylabel('%'); ax.set_title('Panel 6: Complications'); ax.legend(fontsize=7) ax = axes[3, 0] mrs_vals = [0,1,2,3,4,5] for i, s in enumerate(scenarios): alive = dfs[s][dfs[s]['died_in_hospital']==0] if len(alive) > 0: vals = [alive['mrs_discharge'].value_counts(normalize=True).get(m,0)*100 for m in mrs_vals] ax.bar(np.arange(len(mrs_vals))+i*0.25, vals, 0.25, label=labels.get(s,s), color=colors[s], alpha=0.8) ax.set_xticks(np.arange(len(mrs_vals))+0.25); ax.set_xticklabels([f'mRS {m}' for m in mrs_vals], fontsize=6); ax.set_ylabel('%'); ax.set_title('Panel 7: Discharge mRS (survivors)'); ax.legend(fontsize=7) ax = axes[3, 1] num_cols = ['ct_scan_done','thrombolysis_given','stroke_unit_admitted','nihss_score','aspiration_pneumonia','died_in_hospital'] corr = all_df[num_cols].corr() im = ax.imshow(corr, cmap='RdBu_r', vmin=-1, vmax=1, aspect='auto') ax.set_xticks(range(len(num_cols))); ax.set_yticks(range(len(num_cols))) ax.set_xticklabels([c.replace('_','\n') for c in num_cols], fontsize=5, rotation=45, ha='right') ax.set_yticklabels([c.replace('_','\n') for c in num_cols], fontsize=5) ax.set_title('Panel 8: Correlation Heatmap'); fig.colorbar(im, ax=ax, fraction=0.046) plt.tight_layout(rect=[0,0,1,0.96]); plt.savefig('validation_report.png', dpi=150, bbox_inches='tight'); plt.close() print("Saved validation_report.png") if __name__ == '__main__': main()