#!/usr/bin/env python3 """Validation & Diagnostic Visualization for Laboratory Reagent Supply Dataset.""" import pandas as pd import numpy as np import matplotlib.pyplot as plt import os SCENARIOS = ['reference_laboratory', 'district_laboratory', 'health_centre_lab'] def load_scenarios(data_dir='data'): dfs = {} for sc in SCENARIOS: path = os.path.join(data_dir, f'lab_{sc}.csv') if os.path.exists(path): dfs[sc] = pd.read_csv(path) return dfs def make_report(dfs, output='validation_report.png'): fig, axes = plt.subplots(4, 2, figsize=(16, 24)) fig.suptitle( 'Laboratory Reagent Supply — Validation Report\n' '(Reference Lab → District Lab → Health Centre)', fontsize=15, fontweight='bold', y=0.99) colors = ['#2ecc71', '#f39c12', '#e74c3c'] x = np.arange(len(SCENARIOS)) labels = ['Reference Lab', 'District Lab', 'Health Centre'] ax = axes[0, 0] avail = [dfs[sc]['available_on_survey_day'].mean()*100 for sc in SCENARIOS if sc in dfs] ax.bar(x, avail, color=colors, alpha=0.8) ax.set_xticks(x); ax.set_xticklabels(labels, fontsize=9) for i, v in enumerate(avail): ax.text(i, v+1, f'{v:.0f}%', ha='center', fontsize=10, fontweight='bold') ax.set_ylabel('Availability (%)'); ax.set_title('Reagent Availability'); ax.set_ylim(0,100) ax = axes[0, 1] df = dfs.get('district_laboratory', list(dfs.values())[0]) dept = df.groupby('department')['available_on_survey_day'].mean().sort_values() ax.barh(range(len(dept)), dept.values*100, color='#3498db', alpha=0.7) ax.set_yticks(range(len(dept))) ax.set_yticklabels([s.replace('_',' ').title() for s in dept.index], fontsize=7) ax.set_xlabel('Availability (%)'); ax.set_title('Availability by Department (District)') ax = axes[1, 0] so = [dfs[sc]['stocked_out_in_last_6m'].mean()*100 for sc in SCENARIOS if sc in dfs] ax.bar(x, so, color=colors, alpha=0.8) ax.set_xticks(x); ax.set_xticklabels(labels, fontsize=9) for i, v in enumerate(so): ax.text(i, v+1, f'{v:.0f}%', ha='center', fontsize=10, fontweight='bold') ax.set_ylabel('Rate (%)'); ax.set_title('Stocked Out ≥1x in Last 6 Months') ax = axes[1, 1] eq = [dfs[sc]['equipment_functional'].mean()*100 for sc in SCENARIOS if sc in dfs] ax.bar(x, eq, color=colors, alpha=0.8) ax.set_xticks(x); ax.set_xticklabels(labels, fontsize=9) for i, v in enumerate(eq): ax.text(i, v+1, f'{v:.0f}%', ha='center', fontsize=10, fontweight='bold') ax.set_ylabel('Rate (%)'); ax.set_title('Equipment Functional') ax = axes[2, 0] so_df = df[df['stocked_out_in_last_6m']==1] if len(so_df)>0: causes = so_df['stockout_cause'].value_counts().head(8) ax.barh(range(len(causes)), causes.values, color='#e74c3c', alpha=0.7) ax.set_yticks(range(len(causes))) ax.set_yticklabels([s.replace('_',' ').title() for s in causes.index], fontsize=7) ax.set_xlabel('Count') ax.set_title('Top Stockout Causes (District)') ax = axes[2, 1] tests_missed = [dfs[sc]['tests_not_done_no_reagent'].mean() for sc in SCENARIOS if sc in dfs] ax.bar(x, tests_missed, color=colors, alpha=0.8) ax.set_xticks(x); ax.set_xticklabels(labels, fontsize=9) for i, v in enumerate(tests_missed): ax.text(i, v+0.2, f'{v:.1f}', ha='center', fontsize=10, fontweight='bold') ax.set_ylabel('Mean Tests Missed'); ax.set_title('Tests Not Done Due to Reagent Stockout') ax = axes[3, 0] expired = [dfs[sc]['expired_reagent_found'].mean()*100 for sc in SCENARIOS if sc in dfs] ax.bar(x, expired, color=colors, alpha=0.8) ax.set_xticks(x); ax.set_xticklabels(labels, fontsize=9) for i, v in enumerate(expired): ax.text(i, v+0.5, f'{v:.0f}%', ha='center', fontsize=10, fontweight='bold') ax.set_ylabel('Rate (%)'); ax.set_title('Expired Reagents Found on Shelf') ax = axes[3, 1] ofr = [dfs[sc]['order_fill_rate_pct'].mean() for sc in SCENARIOS if sc in dfs] ax.bar(x, ofr, color=colors, alpha=0.8) ax.set_xticks(x); ax.set_xticklabels(labels, fontsize=9) for i, v in enumerate(ofr): ax.text(i, v+1, f'{v:.0f}%', ha='center', fontsize=10, fontweight='bold') ax.set_ylabel('Fill Rate (%)'); ax.set_title('Order Fill Rate') plt.tight_layout(rect=[0,0,1,0.97]) plt.savefig(output, dpi=150, bbox_inches='tight') print(f'Saved validation report to {output}') plt.close() if __name__ == '__main__': dfs = load_scenarios() if dfs: make_report(dfs)