#!/usr/bin/env python3 """Validation & Diagnostic Visualization for Medical Oxygen Supply Dataset.""" import pandas as pd import numpy as np import matplotlib.pyplot as plt import os SCENARIOS = ['referral_hospital', 'district_hospital', 'rural_health_centre'] def load_scenarios(data_dir='data'): dfs = {} for sc in SCENARIOS: path = os.path.join(data_dir, f'oxygen_{sc}.csv') if os.path.exists(path): dfs[sc] = pd.read_csv(path) return dfs def make_report(dfs, output='validation_report.png'): fig, axes = plt.subplots(4, 2, figsize=(16, 24)) fig.suptitle( 'Medical Oxygen Supply — Validation Report\n' '(Referral Hospital → District Hospital → Rural Health Centre)', fontsize=15, fontweight='bold', y=0.99) colors = ['#2ecc71', '#f39c12', '#e74c3c'] x = np.arange(len(SCENARIOS)) labels = ['Referral Hosp', 'District Hosp', 'Rural HC'] # Panel 1: Oxygen available today ax = axes[0, 0] avail = [dfs[sc]['oxygen_available_today'].mean()*100 for sc in SCENARIOS if sc in dfs] ax.bar(x, avail, color=colors, alpha=0.8) ax.set_xticks(x) ax.set_xticklabels(labels, fontsize=9) for i, v in enumerate(avail): ax.text(i, v + 1, f'{v:.0f}%', ha='center', fontsize=10, fontweight='bold') ax.set_ylabel('Availability (%)') ax.set_title('Oxygen Available on Day of Assessment') ax.set_ylim(0, 100) # Panel 2: Oxygen source distribution (district) ax = axes[0, 1] df = dfs.get('district_hospital', list(dfs.values())[0]) src = df['primary_oxygen_source'].value_counts() ax.barh(range(len(src)), src.values, color='#3498db', alpha=0.7) ax.set_yticks(range(len(src))) ax.set_yticklabels([s.replace('_', ' ').title() for s in src.index], fontsize=8) ax.set_xlabel('Count') ax.set_title('Primary Oxygen Source (District Hospital)') # Panel 3: Pulse oximetry functional ax = axes[1, 0] pox = [dfs[sc]['pulse_oximeter_functional'].mean()*100 for sc in SCENARIOS if sc in dfs] ax.bar(x, pox, color=colors, alpha=0.8) ax.set_xticks(x) ax.set_xticklabels(labels, fontsize=9) for i, v in enumerate(pox): ax.text(i, v + 1, f'{v:.0f}%', ha='center', fontsize=10, fontweight='bold') ax.set_ylabel('Rate (%)') ax.set_title('Functional Pulse Oximetry') # Panel 4: Patients needing vs receiving oxygen ax = axes[1, 1] w = 0.3 need = [dfs[sc]['patients_needing_oxygen'].mean() for sc in SCENARIOS if sc in dfs] recv = [dfs[sc]['patients_received_oxygen'].mean() for sc in SCENARIOS if sc in dfs] ax.bar(x - w/2, need, w, label='Needing O₂', color='#e74c3c', alpha=0.8) ax.bar(x + w/2, recv, w, label='Received O₂', color='#2ecc71', alpha=0.8) ax.set_xticks(x) ax.set_xticklabels(labels, fontsize=9) ax.set_ylabel('Mean Patients/Month') ax.set_title('Oxygen Need vs Delivery Gap') ax.legend(fontsize=8) # Panel 5: Hypoxemia deaths ax = axes[2, 0] deaths = [dfs[sc]['deaths_hypoxemia_related'].mean() for sc in SCENARIOS if sc in dfs] ax.bar(x, deaths, color=colors, alpha=0.8) ax.set_xticks(x) ax.set_xticklabels(labels, fontsize=9) for i, v in enumerate(deaths): ax.text(i, v + 0.1, f'{v:.1f}', ha='center', fontsize=10, fontweight='bold') ax.set_ylabel('Mean Deaths/Month') ax.set_title('Hypoxemia-Related Deaths (per observation)') # Panel 6: Shortage causes (district) ax = axes[2, 1] short_df = df[df['shortage_cause'] != 'not_applicable'] if len(short_df) > 0: causes = short_df['shortage_cause'].value_counts().head(8) ax.barh(range(len(causes)), causes.values, color='#e74c3c', alpha=0.7) ax.set_yticks(range(len(causes))) ax.set_yticklabels([s.replace('_', ' ').title() for s in causes.index], fontsize=7) ax.set_xlabel('Count') ax.set_title('Top Oxygen Shortage Causes (District)') # Panel 7: Concentrator functional rate ax = axes[3, 0] conc_func = [] for sc in SCENARIOS: if sc in dfs: has_conc = dfs[sc][dfs[sc]['concentrator_count'] > 0] if len(has_conc) > 0: rate = (has_conc['concentrator_functional'] / has_conc['concentrator_count']).mean() * 100 else: rate = 0 conc_func.append(rate) ax.bar(x, conc_func, color=colors, alpha=0.8) ax.set_xticks(x) ax.set_xticklabels(labels, fontsize=9) for i, v in enumerate(conc_func): ax.text(i, v + 1, f'{v:.0f}%', ha='center', fontsize=10, fontweight='bold') ax.set_ylabel('Functional Rate (%)') ax.set_title('Concentrator Functionality (among facilities with concentrators)') # Panel 8: Distance to refill & transport ax = axes[3, 1] dist = [dfs[sc]['distance_to_refill_km'].mean() for sc in SCENARIOS if sc in dfs] ax.bar(x, dist, color=colors, alpha=0.8) ax.set_xticks(x) ax.set_xticklabels(labels, fontsize=9) for i, v in enumerate(dist): ax.text(i, v + 2, f'{v:.0f}km', ha='center', fontsize=10, fontweight='bold') ax.set_ylabel('Distance (km)') ax.set_title('Mean Distance to Cylinder Refill Point') plt.tight_layout(rect=[0, 0, 1, 0.97]) plt.savefig(output, dpi=150, bbox_inches='tight') print(f'Saved validation report to {output}') plt.close() if __name__ == '__main__': dfs = load_scenarios() if dfs: make_report(dfs)