#!/usr/bin/env python3 """Validation & Diagnostic Visualization for iCCM CHW Triage Dataset.""" import pandas as pd import numpy as np import matplotlib.pyplot as plt import os SCENARIOS = ['low_burden', 'moderate_burden', 'high_burden'] def load_scenarios(data_dir='data'): dfs = {} for sc in SCENARIOS: path = os.path.join(data_dir, f'iccm_{sc}.csv') if os.path.exists(path): dfs[sc] = pd.read_csv(path) return dfs def make_report(dfs, output='validation_report.png'): fig, axes = plt.subplots(4, 2, figsize=(16, 22)) fig.suptitle('iCCM Community Health Worker Triage — Validation Report', fontsize=16, fontweight='bold', y=0.98) df = dfs.get('moderate_burden', list(dfs.values())[0]) # Panel 1: True diagnosis distribution ax = axes[0, 0] diags = ['malaria', 'pneumonia', 'diarrhoea', 'mixed', 'other_febrile'] colors_d = ['#e74c3c', '#3498db', '#f39c12', '#9b59b6', '#95a5a6'] counts = [((df['true_diagnosis'] == d).sum()) for d in diags] ax.bar(range(5), counts, color=colors_d) ax.set_xticks(range(5)) ax.set_xticklabels([d.replace('_', ' ').title() for d in diags], fontsize=8) for i, v in enumerate(counts): ax.text(i, v + 30, f'{v/len(df)*100:.1f}%', ha='center', fontsize=9) ax.set_ylabel('Count') ax.set_title('True Diagnosis (Moderate Burden)') # Panel 2: CHW action distribution ax = axes[0, 1] actions = df['chw_action'].value_counts() colors_a = {'treat_at_community': '#2ecc71', 'refer_urgently': '#e74c3c', 'treat_and_refer': '#f39c12', 'refer': '#e67e22'} ax.bar(range(len(actions)), actions.values, color=[colors_a.get(a, '#95a5a6') for a in actions.index]) ax.set_xticks(range(len(actions))) ax.set_xticklabels([a.replace('_', '\n') for a in actions.index], fontsize=7) for i, v in enumerate(actions.values): ax.text(i, v + 30, f'{v/len(df)*100:.1f}%', ha='center', fontsize=9) ax.set_ylabel('Count') ax.set_title('CHW Action') # Panel 3: Symptom prevalence ax = axes[1, 0] syms = ['fever', 'cough', 'fast_breathing', 'diarrhoea', 'any_danger_sign'] vals = [df[s].mean() * 100 for s in syms] ax.barh(range(5), vals, color='#3498db', alpha=0.8) ax.set_yticks(range(5)) ax.set_yticklabels([s.replace('_', ' ').title() for s in syms]) for i, v in enumerate(vals): ax.text(v + 0.5, i, f'{v:.1f}%', va='center', fontsize=10) ax.set_xlabel('Prevalence (%)') ax.set_title('Symptom & Sign Prevalence') # Panel 4: Treatment given ax = axes[1, 1] treatments = ['act_given', 'amoxicillin_given', 'ors_given', 'zinc_given'] t_vals = [df[t].mean() * 100 for t in treatments] colors_t = ['#e74c3c', '#3498db', '#f39c12', '#2ecc71'] ax.bar(range(4), t_vals, color=colors_t, alpha=0.8) ax.set_xticks(range(4)) ax.set_xticklabels(['ACT', 'Amoxicillin', 'ORS', 'Zinc']) for i, v in enumerate(t_vals): ax.text(i, v + 0.5, f'{v:.1f}%', ha='center', fontsize=10) ax.set_ylabel('% of all cases') ax.set_title('Treatment Given') # Panel 5: Cross-scenario diagnosis rates ax = axes[2, 0] x = np.arange(len(diags)) width = 0.25 for i, sc in enumerate(SCENARIOS): if sc not in dfs: continue d = dfs[sc] rates = [(d['true_diagnosis'] == diag).mean() * 100 for diag in diags] ax.bar(x + i * width, rates, width, label=sc.replace('_', ' ').title(), alpha=0.8) ax.set_xticks(x + width) ax.set_xticklabels([d.replace('_', ' ').title() for d in diags], fontsize=7) ax.set_ylabel('Prevalence (%)') ax.set_title('Diagnosis Rates Across Scenarios') ax.legend(fontsize=8) # Panel 6: MUAC distribution ax = axes[2, 1] ax.hist(df['muac_cm'], bins=50, color='#9b59b6', alpha=0.7, edgecolor='white') ax.axvline(11.5, color='red', ls='--', lw=1.5, label='SAM <11.5') ax.axvline(12.5, color='orange', ls='--', lw=1.5, label='MAM <12.5') ax.set_xlabel('MUAC (cm)') ax.set_title(f'MUAC Distribution (SAM={( df["nutrition_status"]=="SAM").mean()*100:.1f}%)') ax.legend(fontsize=8) # Panel 7: Age distribution by diagnosis ax = axes[3, 0] for diag, color in [('malaria', '#e74c3c'), ('pneumonia', '#3498db'), ('diarrhoea', '#f39c12')]: sub = df[df['true_diagnosis'] == diag]['age_months'] ax.hist(sub, bins=30, alpha=0.5, color=color, label=diag.title(), edgecolor='white') ax.set_xlabel('Age (months)') ax.set_title('Age Distribution by Diagnosis') ax.legend(fontsize=9) # Panel 8: Referral rate across scenarios ax = axes[3, 1] ref_rates = [] ds_rates = [] sam_rates = [] for sc in SCENARIOS: if sc not in dfs: continue d = dfs[sc] ref_rates.append(np.mean(['refer' in str(a) for a in d['chw_action']]) * 100) ds_rates.append(d['any_danger_sign'].mean() * 100) sam_rates.append((d['nutrition_status'] == 'SAM').mean() * 100) x = np.arange(len(SCENARIOS)) ax.bar(x - 0.2, ref_rates, 0.2, label='Referral Rate', color='#e74c3c', alpha=0.8) ax.bar(x, ds_rates, 0.2, label='Danger Signs', color='#f39c12', alpha=0.8) ax.bar(x + 0.2, sam_rates, 0.2, label='SAM', color='#9b59b6', alpha=0.8) ax.set_xticks(x) ax.set_xticklabels([s.replace('_', '\n').title() for s in SCENARIOS], fontsize=8) ax.set_ylabel('%') ax.set_title('Referral, Danger Signs, SAM Across Scenarios') ax.legend(fontsize=8) plt.tight_layout(rect=[0, 0, 1, 0.97]) plt.savefig(output, dpi=150, bbox_inches='tight') print(f'Saved validation report to {output}') plt.close() if __name__ == '__main__': dfs = load_scenarios() if dfs: make_report(dfs)