absl-py==2.3.1
accelerate==1.9.0
adjusttext==1.3.0
adpbulk==0.1.4
aiofiles==24.1.0
aiohappyeyeballs==2.6.1
aiohttp==3.12.15
aiosignal==1.4.0
anndata==0.12.1
antlr4-python3-runtime==4.9.3
anyio==4.10.0
argon2-cffi==25.1.0
argon2-cffi-bindings==25.1.0
array-api-compat==1.12.0
arrow==1.3.0
arviz==0.22.0
async-lru==2.0.5
attrs==25.3.0
babel==2.17.0
beautifulsoup4==4.13.4
bleach==6.2.0
blitzgsea==1.3.54
cached-property==2.0.1
cell-eval==0.5.42
cell-gears==0.1.2
certifi==2025.8.3
cffi==1.17.1
charset-normalizer==3.4.2
chex==0.1.90
click==8.2.1
contourpy==1.3.3
cpa==0.4.1
crc32c==2.7.1
cycler==0.12.1
datasets==2.21.0
dcor==0.6
debugpy==1.8.15
defusedxml==0.7.1
deprecated==1.2.18
dill==0.3.8
docrep==0.3.2
docstring-parser==0.17.0
donfig==0.8.1.post1
einops==0.8.1
equinox==0.13.0
et-xmlfile==2.0.0
etils==1.13.0
fast-array-utils==1.2.1
fastjsonschema==2.21.1
filelock==3.18.0
flax==0.11.0
fonttools==4.59.0
formulaic==1.2.0
formulaic-contrasts==1.0.0
fqdn==1.5.1
frozenlist==1.7.0
fsspec==2024.6.1
grpcio==1.74.0
h11==0.16.0
h5netcdf==1.6.3
h5py==3.14.0
hf-xet==1.1.5
httpcore==1.0.9
httpx==0.28.1
huggingface-hub==0.34.3
humanize==4.12.3
idna==3.10
igraph==0.11.9
importlib-resources==6.5.2
iniconfig==2.1.0
interface-meta==1.3.0
ipywidgets==8.1.7
isoduration==20.11.0
jax==0.6.2
jaxlib==0.6.2
jaxopt==0.8.5
jaxtyping==0.3.2
jinja2==3.1.6
joblib==1.5.1
json5==0.12.0
jsonpointer==3.0.0
jsonschema==4.25.0
jsonschema-specifications==2025.4.1
jupyter==1.1.1
jupyter-console==6.6.3
jupyter-events==0.12.0
jupyter-lsp==2.2.6
jupyter-server==2.16.0
jupyter-server-terminals==0.5.3
jupyterlab==4.4.5
jupyterlab-pygments==0.3.0
jupyterlab-server==2.27.3
jupyterlab-widgets==3.0.15
kiwisolver==1.4.8
lamin-utils==0.15.0
lark==1.2.2
legacy-api-wrap==1.4.1
leidenalg==0.10.2
lightning==2.5.2
lightning-utilities==0.15.0
lineax==0.0.8
llvmlite==0.44.0
markdown==3.8.2
markdown-it-py==3.0.0
markupsafe==3.0.2
matplotlib==3.10.5
mdurl==0.1.2
mistune==3.1.3
ml-collections==1.1.0
ml-dtypes==0.5.3
mpmath==1.3.0
msgpack==1.1.1
mudata==0.3.2
multidict==6.6.3
multipledispatch==1.0.0
multiprocess==0.70.16
narwhals==2.0.1
natsort==8.4.0
nbclient==0.10.2
nbconvert==7.16.6
nbformat==5.10.4
networkx==3.5
notebook==7.4.5
notebook-shim==0.2.4
numba==0.61.2
numcodecs==0.16.1
numpy==2.2.6
numpyro==0.18.0
nvidia-cublas-cu12==12.6.4.1
nvidia-cuda-cupti-cu12==12.6.80
nvidia-cuda-nvrtc-cu12==12.6.77
nvidia-cuda-runtime-cu12==12.6.77
nvidia-cudnn-cu12==9.5.1.17
nvidia-cufft-cu12==11.3.0.4
nvidia-cufile-cu12==1.11.1.6
nvidia-curand-cu12==10.3.7.77
nvidia-cusolver-cu12==11.7.1.2
nvidia-cusparse-cu12==12.5.4.2
nvidia-cusparselt-cu12==0.6.3
nvidia-nccl-cu12==2.26.2
nvidia-nvjitlink-cu12==12.6.85
nvidia-nvtx-cu12==12.6.77
omegaconf==2.3.0
openpyxl==3.1.5
opt-einsum==3.4.0
optax==0.2.5
orbax==0.1.7
orbax-checkpoint==0.11.20
ott-jax==0.5.1
overrides==7.7.0
pandas==2.3.1
pandocfilters==1.5.1
patsy==1.0.1
pdex==0.1.21
pertpy==1.0.1
pillow==11.3.0
pluggy==1.6.0
ply==3.11
polars==1.32.0
pot==0.9.5
prometheus-client==0.22.1
propcache==0.3.2
protobuf==6.31.1
psutil==7.0.0
pubchempy==1.0.4
pyarrow==21.0.0
pycparser==2.22
pydeseq2==0.5.2
pydot==4.0.1
pynndescent==0.5.13
pyomo==6.9.2
pyparsing==3.2.3
pyro-api==0.1.2
pyro-ppl==1.9.1
pytest==8.4.1
python-json-logger==3.3.0
pytorch-lightning==1.9.5
pytz==2025.2
pyyaml==6.0.2
pyzmq==27.0.1
rdkit==2025.3.5
referencing==0.36.2
requests==2.32.4
rfc3339-validator==0.1.4
rfc3986-validator==0.1.1
rfc3987-syntax==1.1.0
rich==14.1.0
rpds-py==0.26.0
safetensors==0.5.3
scanpy==1.11.4
scgpt==0.2.4
scib==1.1.7
scikit-learn==1.7.1
scikit-misc==0.5.1
scipy==1.16.1
scvi-tools==0.20.3
seaborn==0.13.2
send2trash==1.8.3
session-info==1.0.1
session-info2==0.2
shtab==1.7.2
simplejson==3.20.1
sniffio==1.3.1
soupsieve==2.7
sparse==0.17.0
sparsecca==0.3.1
statsmodels==0.14.5
stdlib-list==0.11.1
sympy==1.14.0
tensorboard==2.20.0
tensorboard-data-server==0.7.2
tensorstore==0.1.76
terminado==0.18.1
texttable==1.7.0
threadpoolctl==3.6.0
timm==1.0.19
tinycss2==1.4.0
tomlkit==0.13.3
toolz==1.0.0
torch==2.7.1
torch-geometric==2.6.1
torchaudio==2.7.1
torchdiffeq==0.2.5
torchinfo==1.8.0
torchmetrics==1.8.0
torchtext==0.18.0
torchvision==0.22.1
tornado==6.5.1
tqdm==4.67.1
treescope==0.1.9
triton==3.3.1
typeguard==4.4.4
types-python-dateutil==2.9.0.20250708
tyro==0.9.27
tzdata==2025.2
umap-learn==0.5.9.post2
uri-template==1.3.0
urllib3==2.5.0
wadler-lindig==0.1.7
webcolors==24.11.1
webencodings==0.5.1
websocket-client==1.8.0
werkzeug==3.1.3
widgetsnbextension==4.0.14
wrapt==1.17.2
xarray==2025.7.1
xarray-einstats==0.9.1
xxhash==3.5.0
yarl==1.20.1
zarr==3.1.1