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README.md

@@ -27,6 +27,14 @@ normalizations:
 - `qualifying_conditions` → `qualifying_conditions_normalized`
 - `measured_value` → `scalar_value`
 
+The public column names on the left are retained; the names on the right identify the
+validated internal values used to replace them. Columns omitted from this dataset:
+
+- `extraction_id`: `internal_identifier`
+- `global_identifier`: `internal_identifier`
+- `auc_window`: `all_null_in_dataset`
+- `defining_timepoint`: `all_null_in_dataset`
+
 `canonical_endpoint_key` is the endpoint identity field. No `condition_key` is added.
 `species_exact` is populated only for explicit, unambiguous species references. Narrative
 and other source fields without a validated normalization remain source text.

data/train-00000-of-00001.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:ada5c3e93fed9725064f5ef6575dc320aca29475c7a9ba8fe31271f2ddcef764
-size 285032
+oid sha256:6389e9504352427cfcea495c47f6d67605e7c1cf709b226dacf66e7128fc7e0c
+size 278207

metadata/export_manifest.json

@@ -1,7 +1,7 @@
 {
   "artifacts": {
-    "README.md": "e0f282e7a2dfcf081150d9f73b5a22a5a1590b54188fcd9c1557c66f82a8c466",
-    "data/train-00000-of-00001.parquet": "ada5c3e93fed9725064f5ef6575dc320aca29475c7a9ba8fe31271f2ddcef764"
+    "README.md": "30a6a4994e78b755a8c71d764f57ae3c7d2255a6fc0a538e17b77f7e0fbacbc6",
+    "data/train-00000-of-00001.parquet": "6389e9504352427cfcea495c47f6d67605e7c1cf709b226dacf66e7128fc7e0c"
   },
   "canonical_base_yields": {
     "accepted_base_children": 1490,
@@ -14,17 +14,13 @@
     "accompanying_interval_lower": "double",
     "accompanying_interval_upper": "double",
     "assay_system": "large_string",
-    "auc_window": "large_string",
     "canonical_endpoint_key": "large_string",
     "child_id": "large_string",
     "confidence": "large_string",
-    "defining_timepoint": "large_string",
     "direction": "large_string",
     "endpoint_family": "large_string",
     "endpoint_subtype": "large_string",
     "extra_details": "large_string",
-    "extraction_id": "large_string",
-    "global_identifier": "large_string",
     "gut_wall_process": "large_string",
     "input_sha256": "large_string",
     "intestinal_site": "large_string",
@@ -53,12 +49,30 @@
     "variation_value": "double"
   },
   "condition_key_included": false,
-  "export_version": "hf_cleaned_v1",
+  "export_version": "hf_cleaned_v2",
   "input_records": {
     "manifest_sha256": "d69cde527e24d2c94b0870040c55a1f7a12c0308406dc9ff17f3d5ad4fbdeb0e",
     "path": "/data1/joseph/starling_assay_transfer/datasets/base/canonical_endpoints_v1/gut_wall/records.parquet",
     "sha256": "fd41246b21c7209e47f89f20dcfa936b266ceb3f851bf3b772483d88301cbc6a"
   },
+  "omitted_columns": [
+    {
+      "column": "extraction_id",
+      "reason": "internal_identifier"
+    },
+    {
+      "column": "global_identifier",
+      "reason": "internal_identifier"
+    },
+    {
+      "column": "auc_window",
+      "reason": "all_null_in_dataset"
+    },
+    {
+      "column": "defining_timepoint",
+      "reason": "all_null_in_dataset"
+    }
+  ],
   "rows": 1490,
   "source_id": "q3",
   "source_name": "gut_wall"