Upload folder using huggingface_hub

README.md

@@ -28,6 +28,14 @@ normalizations:
 - `qualifying_conditions` → `qualifying_conditions_normalized`
 - `reported_value` → `scalar_value`
 
+The public column names on the left are retained; the names on the right identify the
+validated internal values used to replace them. Columns omitted from this dataset:
+
+- `extraction_id`: `internal_identifier`
+- `global_identifier`: `internal_identifier`
+- `direction`: `all_null_in_dataset`
+- `auc_window`: `all_null_in_dataset`
+
 `canonical_endpoint_key` is the endpoint identity field. No `condition_key` is added.
 `species_exact` is populated only for explicit, unambiguous species references. Narrative
 and other source fields without a validated normalization remain source text.

data/train-00000-of-00001.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:2f7c5ada9b7d99631868391100b558e47c3b665a8f982009283abf903c9bd579
-size 3083166
+oid sha256:8e24c1d6472f7834445c6d7238ee8d99b1870809db52cd20bf02d835a9b4d0da
+size 3038452

metadata/export_manifest.json

@@ -1,7 +1,7 @@
 {
   "artifacts": {
-    "README.md": "9fc87ea4436ea171f7dd58fee967e40f7a2378586928838fe985504f8727f836",
-    "data/train-00000-of-00001.parquet": "2f7c5ada9b7d99631868391100b558e47c3b665a8f982009283abf903c9bd579"
+    "README.md": "0e7470ddb84f002b2f693596d3822887f07d8ba813a7c0cdd3b7f8d02e87ecce",
+    "data/train-00000-of-00001.parquet": "8e24c1d6472f7834445c6d7238ee8d99b1870809db52cd20bf02d835a9b4d0da"
   },
   "canonical_base_yields": {
     "accepted_base_children": 17637,
@@ -14,18 +14,14 @@
     "accompanying_interval_lower": "double",
     "accompanying_interval_upper": "double",
     "assay_system": "large_string",
-    "auc_window": "large_string",
     "canonical_endpoint_key": "large_string",
     "child_id": "large_string",
     "confidence": "large_string",
     "defining_timepoint": "large_string",
-    "direction": "large_string",
     "endpoint_family": "large_string",
     "endpoint_subtype": "large_string",
     "enzyme_or_pathway": "large_string",
     "extra_details": "large_string",
-    "extraction_id": "large_string",
-    "global_identifier": "large_string",
     "input_sha256": "large_string",
     "kinetic_parameter": "large_string",
     "metric_type": "large_string",
@@ -53,12 +49,30 @@
     "variation_value": "double"
   },
   "condition_key_included": false,
-  "export_version": "hf_cleaned_v1",
+  "export_version": "hf_cleaned_v2",
   "input_records": {
     "manifest_sha256": "728962c727ed9d55050c9d95bb20c9284781f3040126b1e0e7b3b86a8f0febe9",
     "path": "/data1/joseph/starling_assay_transfer/datasets/base/canonical_endpoints_v1/hepatic/records.parquet",
     "sha256": "d175c8bbdac54b3f529b8ec93d913dd1695667fd873d2b4074b32cdca1187fcd"
   },
+  "omitted_columns": [
+    {
+      "column": "extraction_id",
+      "reason": "internal_identifier"
+    },
+    {
+      "column": "global_identifier",
+      "reason": "internal_identifier"
+    },
+    {
+      "column": "direction",
+      "reason": "all_null_in_dataset"
+    },
+    {
+      "column": "auc_window",
+      "reason": "all_null_in_dataset"
+    }
+  ],
   "rows": 17637,
   "source_id": "q4",
   "source_name": "hepatic"