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Datasets:
macwiatrak
/
bacbench-antibiotic-resistance-dna

Modalities:
Text
Formats:
parquet
Size:
10K - 100K
Tags:
bacteria
antibiotics
AMR
genomics
genomes
DNA
Libraries:
Datasets
Dask
License:
Dataset card Data Studio Files
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README.md CHANGED
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  # Dataset for antibiotic resistance prediction from whole-bacterial genomes (DNA)
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  A dataset of 25,032 bacterial genomes across 39 species with antimicrobial resistance labels.
@@ -39,7 +53,7 @@ item = next(iter(ds))
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  labels_df = pd.read_csv("<input-dir>/mic_regression_labels.csv").set_index("genome_name")
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  # fetch labels
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- labels = binary_labels_df.loc[item["genome_name"]]
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  # drop antibiotics without a value for the genome (NaN)
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  labels = labels.dropna()
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  ```
 
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+ ---
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+ license: apache-2.0
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+ tags:
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+ - bacteria
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+ - antibiotics
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+ - AMR
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+ - genomics
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+ - genomes
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+ - DNA
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+ - biology
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+ pretty_name: Dataset for predicting antibiotic resistance from bacterial genomes (DNA)
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+ size_categories:
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+ - 10K<n<100K
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+ ---
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  # Dataset for antibiotic resistance prediction from whole-bacterial genomes (DNA)
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  A dataset of 25,032 bacterial genomes across 39 species with antimicrobial resistance labels.
 
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  labels_df = pd.read_csv("<input-dir>/mic_regression_labels.csv").set_index("genome_name")
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  # fetch labels
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+ labels = labels_df.loc[item["genome_name"]]
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  # drop antibiotics without a value for the genome (NaN)
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  labels = labels.dropna()
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  ```