"""Transformer baselines. - ViT2D: ViT-B/16 (timm, pretrained) over 2.5D multi-slice input. Slices are encoded independently by the shared ViT and mean-pooled, then classified. Supports 2-stage fine-tuning via freeze_backbone(). - SwinT3D: MONAI SwinUNETR encoder (Swin-Tiny-scale) over a 3D crop, GAP + head. """ from __future__ import annotations import timm import torch import torch.nn as nn class ViT2D(nn.Module): """ViT-B/16 over N 2D slices, mean-pooled embeddings -> classifier. Input: (B, N, 3, 224, 224) or (B, 3, 224, 224). Shared backbone across slices. """ def __init__(self, n_classes: int = 3, pretrained: bool = True): super().__init__() self.backbone = timm.create_model( "vit_base_patch16_224", pretrained=pretrained, num_classes=0, ) self.embed_dim = self.backbone.num_features # 768 self.head = nn.Linear(self.embed_dim, n_classes) def freeze_backbone(self, freeze: bool = True): for p in self.backbone.parameters(): p.requires_grad = not freeze def unfreeze_last_blocks(self, n_blocks: int = 2): self.freeze_backbone(True) for blk in self.backbone.blocks[-n_blocks:]: for p in blk.parameters(): p.requires_grad = True for p in self.backbone.norm.parameters(): p.requires_grad = True def forward(self, x: torch.Tensor, tab: torch.Tensor | None = None) -> torch.Tensor: if x.dim() == 4: x = x.unsqueeze(1) # (B,1,3,224,224) b, n = x.shape[:2] x = x.flatten(0, 1) # (B*N,3,224,224) feats = self.backbone(x) # (B*N,768) feats = feats.view(b, n, -1).mean(1) # mean-pool slices return self.head(feats) class SwinT3D(nn.Module): """3D Swin transformer encoder (Swin-Tiny scale) via MONAI, GAP + linear head.""" def __init__(self, n_classes: int = 3, in_channels: int = 1, img_size=(96, 112, 112)): super().__init__() from monai.networks.nets.swin_unetr import SwinTransformer from monai.utils import ensure_tuple_rep patch = ensure_tuple_rep(2, 3) window = ensure_tuple_rep(7, 3) self.swin = SwinTransformer( in_chans=in_channels, embed_dim=48, window_size=window, patch_size=patch, depths=(2, 2, 2, 2), num_heads=(3, 6, 12, 24), spatial_dims=3, ) self.norm = nn.LayerNorm(48 * 16) self.head = nn.Linear(48 * 16, n_classes) def forward(self, vol: torch.Tensor, tab: torch.Tensor | None = None) -> torch.Tensor: feats = self.swin(vol)[-1] # deepest stage (B, 8C, d, h, w) pooled = feats.flatten(2).mean(-1) # GAP -> (B, 8C) return self.head(self.norm(pooled))