[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib/x86_64-linux-gnu/libthread_db.so.1".
[Detaching after vfork from child process 2266953]
h5py 3.16.0 hdf5 2.1.0
opened

Program received signal SIGINT, Interrupt.
H5F_sizeof_size (f=f@entry=0xfea930) at /home/runner/work/hdf5/hdf5/hdf5-2.1.0/src/H5Fquery.c:404
warning: 404	/home/runner/work/hdf5/hdf5/hdf5-2.1.0/src/H5Fquery.c: No such file or directory

Thread 1 (Thread 0x7ffff7e6a300 (LWP 2266916) "python"):
#0  H5F_sizeof_size (f=f@entry=0xfea930) at /home/runner/work/hdf5/hdf5/hdf5-2.1.0/src/H5Fquery.c:404
#1  0x00007ffff6fc1cb8 in H5HG__cache_heap_deserialize (_image=<optimized out>, len=<optimized out>, _udata=0xfea930, dirty=<optimized out>) at /home/runner/work/hdf5/hdf5/hdf5-2.1.0/src/H5HGcache.c:337
#2  0x00007ffff6eafe52 in H5C__load_entry (udata=0xfea930, addr=2048, type=0x7ffff72ced40 <H5AC_GHEAP>, f=0xfea930) at /home/runner/work/hdf5/hdf5/hdf5-2.1.0/src/H5Centry.c:1241
#3  H5C_protect (f=f@entry=0xfea930, type=type@entry=0x7ffff72ced40 <H5AC_GHEAP>, addr=addr@entry=2048, udata=udata@entry=0xfea930, flags=flags@entry=128) at /home/runner/work/hdf5/hdf5/hdf5-2.1.0/src/H5Centry.c:3149
#4  0x00007ffff6e8d4c1 in H5AC_protect (f=f@entry=0xfea930, type=0x7ffff72ced40 <H5AC_GHEAP>, addr=addr@entry=2048, udata=udata@entry=0xfea930, flags=128) at /home/runner/work/hdf5/hdf5/hdf5-2.1.0/src/H5AC.c:1302
#5  0x00007ffff6fbf469 in H5HG__protect (f=f@entry=0xfea930, addr=2048, flags=flags@entry=128) at /home/runner/work/hdf5/hdf5/hdf5-2.1.0/src/H5HG.c:238
#6  0x00007ffff6fc0049 in H5HG_get_obj_size (f=f@entry=0xfea930, hobj=hobj@entry=0x7fffffffc310, obj_size=obj_size@entry=0x7fffffffc308) at /home/runner/work/hdf5/hdf5/hdf5-2.1.0/src/H5HG.c:704
#7  0x00007ffff71cc573 in H5VL__native_blob_get (obj=0xfea930, blob_id=<optimized out>, buf=0x1091a48, size=29, ctx=<optimized out>) at /home/runner/work/hdf5/hdf5/hdf5-2.1.0/src/H5VLnative_blob.c:118
#8  0x00007ffff71b4aad in H5VL__blob_get (obj=0xfea930, cls=0xbdfb50, blob_id=0xf3010c, buf=0x1091a48, size=29, ctx=0x0) at /home/runner/work/hdf5/hdf5/hdf5-2.1.0/src/H5VLcallback.c:7521
#9  0x00007ffff71c3736 in H5VL_blob_get (vol_obj=<optimized out>, blob_id=<optimized out>, buf=<optimized out>, size=<optimized out>, ctx=ctx@entry=0x0) at /home/runner/work/hdf5/hdf5/hdf5-2.1.0/src/H5VLcallback.c:7553
#10 0x00007ffff71a9d60 in H5T__vlen_disk_read (file=<optimized out>, _vl=<optimized out>, buf=<optimized out>, len=<optimized out>) at /home/runner/work/hdf5/hdf5/hdf5-2.1.0/src/H5Tvlen.c:839
#11 0x00007ffff7199bf0 in H5T__conv_vlen (src=<optimized out>, dst=0x103c880, cdata=<optimized out>, conv_ctx=<optimized out>, nelmts=1, buf_stride=<optimized out>, bkg_stride=0, buf=0xf30108, bkg=0x0) at /home/runner/work/hdf5/hdf5/hdf5-2.1.0/src/H5Tconv_vlen.c:412
#12 0x00007ffff70c4c74 in H5T_convert_with_ctx (tpath=tpath@entry=0x1067690, src_type=src_type@entry=0x103cc80, dst_type=dst_type@entry=0x103c880, conv_ctx=conv_ctx@entry=0x7fffffffc6d0, nelmts=nelmts@entry=1, buf_stride=buf_stride@entry=0, bkg_stride=0, buf=0xf30108, bkg=0x0) at /home/runner/work/hdf5/hdf5/hdf5-2.1.0/src/H5T.c:6605
#13 0x00007ffff70c5094 in H5T_convert (tpath=tpath@entry=0x1067690, src_type=0x103cc80, dst_type=dst_type@entry=0x103c880, nelmts=nelmts@entry=1, buf_stride=buf_stride@entry=0, bkg_stride=bkg_stride@entry=0, buf=0xf30108, bkg=0x0) at /home/runner/work/hdf5/hdf5/hdf5-2.1.0/src/H5T.c:6534
#14 0x00007ffff6e86345 in H5A__read (attr=attr@entry=0x1070950, mem_type=mem_type@entry=0x103c880, buf=buf@entry=0x1070a40) at /home/runner/work/hdf5/hdf5/hdf5-2.1.0/src/H5Aint.c:787
#15 0x00007ffff71cb4e2 in H5VL__native_attr_read (attr=0x1070950, dtype_id=<optimized out>, buf=0x1070a40, dxpl_id=792633534417207304, req=<optimized out>) at /home/runner/work/hdf5/hdf5/hdf5-2.1.0/src/H5VLnative_attr.c:213
#16 0x00007ffff71aef0d in H5VL__attr_read (obj=0x1070950, cls=0xbdfb50, mem_type_id=mem_type_id@entry=216172782113784003, buf=buf@entry=0x1070a40, dxpl_id=dxpl_id@entry=792633534417207304, req=req@entry=0x0) at /home/runner/work/hdf5/hdf5/hdf5-2.1.0/src/H5VLcallback.c:1268
#17 0x00007ffff71b7abf in H5VL_attr_read (vol_obj=<optimized out>, mem_type_id=mem_type_id@entry=216172782113784003, buf=buf@entry=0x1070a40, dxpl_id=792633534417207304, req=req@entry=0x0) at /home/runner/work/hdf5/hdf5/hdf5-2.1.0/src/H5VLcallback.c:1302
#18 0x00007ffff6e77b97 in H5A__read_api_common (attr_id=attr_id@entry=504403158265495552, dtype_id=dtype_id@entry=216172782113784003, buf=buf@entry=0x1070a40, token_ptr=token_ptr@entry=0x0, _vol_obj_ptr=_vol_obj_ptr@entry=0x0) at /home/runner/work/hdf5/hdf5/hdf5-2.1.0/src/H5A.c:990
#19 0x00007ffff6e7ab32 in H5Aread (attr_id=attr_id@entry=504403158265495552, dtype_id=dtype_id@entry=216172782113784003, buf=buf@entry=0x1070a40) at /home/runner/work/hdf5/hdf5/hdf5-2.1.0/src/H5A.c:1021
#20 0x00007ffff73c7a79 in __pyx_f_4h5py_4defs_H5Aread (__pyx_v_attr_id=504403158265495552, __pyx_v_mem_type_id=216172782113784003, __pyx_v_buf=0x1070a40) at /tmp/pip-install-aq3ju7m_/h5py_710427fcf0d148a5bf45fb871199dc0a/h5py/defs.c:3927
#21 0x00007ffff7b7f130 in __pyx_f_4h5py_6_proxy_attr_rw (__pyx_v_attr=504403158265495552, __pyx_v_mtype=216172782113783927, __pyx_v_progbuf=0xf3a580, __pyx_v_read=<optimized out>) at /tmp/pip-install-aq3ju7m_/h5py_710427fcf0d148a5bf45fb871199dc0a/h5py/_proxy.c:5421
#22 0x00007ffff44cd0cf in __pyx_pf_4h5py_3h5a_6AttrID_read (__pyx_v_mtype=0x7ffff1b4dc10, __pyx_v_arr=0x7ffff1a82df0, __pyx_v_self=0x7ffff75ea660) at /tmp/pip-build-env-u05q5lgw/overlay/lib/python3.12/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1585
#23 __pyx_pw_4h5py_3h5a_6AttrID_1read (__pyx_v_self=0x7ffff75ea660, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /tmp/pip-install-aq3ju7m_/h5py_710427fcf0d148a5bf45fb871199dc0a/h5py/h5a.c:11013
#24 0x00007ffff7fa9abe in __Pyx_PyVectorcall_FastCallDict_kw (kw=0x7ffff1aaef40, nargs=<optimized out>, args=<optimized out>, vc=<optimized out>, func=0x7ffff1bf4d50) at /tmp/pip-install-aq3ju7m_/h5py_710427fcf0d148a5bf45fb871199dc0a/h5py/_errors.c:7187
#25 __Pyx_PyVectorcall_FastCallDict (kw=0x7ffff1aaef40, nargs=<optimized out>, args=<optimized out>, vc=<optimized out>, func=0x7ffff1bf4d50) at /tmp/pip-install-aq3ju7m_/h5py_710427fcf0d148a5bf45fb871199dc0a/h5py/_errors.c:7216
#26 __Pyx_CyFunction_CallAsMethod (func=0x7ffff1bf4d50, args=<optimized out>, kw=0x7ffff1aaef40) at /tmp/pip-install-aq3ju7m_/h5py_710427fcf0d148a5bf45fb871199dc0a/h5py/_errors.c:8012
#27 0x00007ffff737557d in __Pyx_PyObject_Call (kw=0x7ffff1aaef40, arg=0x7ffff7429c00, func=0x7ffff1bf4d50) at /tmp/pip-install-aq3ju7m_/h5py_710427fcf0d148a5bf45fb871199dc0a/h5py/_objects.c:14469
#28 __pyx_pf_4h5py_8_objects_9with_phil_wrapper (__pyx_v_kwds=0x7ffff7406a80, __pyx_v_args=0x7ffff7429c00, __pyx_self=<optimized out>) at /tmp/pip-install-aq3ju7m_/h5py_710427fcf0d148a5bf45fb871199dc0a/h5py/_objects.c:6087
#29 __pyx_pw_4h5py_8_objects_9with_phil_1wrapper (__pyx_self=<optimized out>, __pyx_args=0x7ffff7429c00, __pyx_kwds=<optimized out>) at /tmp/pip-install-aq3ju7m_/h5py_710427fcf0d148a5bf45fb871199dc0a/h5py/_objects.c:5999
#30 0x000000000054937e in _PyObject_MakeTpCall ()
#31 0x00000000005d7389 in _PyEval_EvalFrameDefault ()
#32 0x00007ffff737557d in __Pyx_PyObject_Call (kw=0x7ffff1aae880, arg=0x7ffff7429a80, func=0x7ffff1ac6c00) at /tmp/pip-install-aq3ju7m_/h5py_710427fcf0d148a5bf45fb871199dc0a/h5py/_objects.c:14469
#33 __pyx_pf_4h5py_8_objects_9with_phil_wrapper (__pyx_v_kwds=0x7ffff74069c0, __pyx_v_args=0x7ffff7429a80, __pyx_self=<optimized out>) at /tmp/pip-install-aq3ju7m_/h5py_710427fcf0d148a5bf45fb871199dc0a/h5py/_objects.c:6087
#34 __pyx_pw_4h5py_8_objects_9with_phil_1wrapper (__pyx_self=<optimized out>, __pyx_args=0x7ffff7429a80, __pyx_kwds=<optimized out>) at /tmp/pip-install-aq3ju7m_/h5py_710427fcf0d148a5bf45fb871199dc0a/h5py/_objects.c:5999
#35 0x00000000005492b5 in _PyObject_MakeTpCall ()
#36 0x00000000005a143d in ?? ()
#37 0x00000000005d81c2 in _PyEval_EvalFrameDefault ()
#38 0x0000000000555546 in ?? ()
#39 0x0000000000560044 in ?? ()
#40 0x00000000005616b6 in ?? ()
#41 0x0000000000549cb5 in PyObject_Vectorcall ()
#42 0x00000000005d7389 in _PyEval_EvalFrameDefault ()
#43 0x00000000005d58bb in PyEval_EvalCode ()
#44 0x0000000000608a33 in PyRun_StringFlags ()
#45 0x00000000006b426e in PyRun_SimpleStringFlags ()
#46 0x00000000006bcf31 in Py_RunMain ()
#47 0x00000000006bc94d in Py_BytesMain ()
#48 0x00007ffff7c2a1ca in __libc_start_call_main (main=main@entry=0x518c60, argc=argc@entry=4, argv=argv@entry=0x7fffffffd898) at ../sysdeps/nptl/libc_start_call_main.h:58
#49 0x00007ffff7c2a28b in __libc_start_main_impl (main=0x518c60, argc=4, argv=0x7fffffffd898, init=<optimized out>, fini=<optimized out>, rtld_fini=<optimized out>, stack_end=0x7fffffffd888) at ../csu/libc-start.c:360
#50 0x0000000000657b05 in _start ()