# Model checkpoints
*.pth
*.pt
out/
out_*/
# Released checkpoints under checkpoints/ are tracked (on Hugging Face)
!checkpoints/*.pth
!checkpoints/*.pt
# ROC/LES trajectory checkpoints (tracked on Hugging Face)
!ROC-Checkpoints/*.pth
!ROC-Checkpoints/*.pt

# Data files
*.csv
*.bin
*.pkl
!requirements.txt
# Reference / inference CSVs that ship with the repo
!MED4_PRS_100.csv
!MED4_RRS_100.csv
!MED4-PPIs-low-confidence_ppiTEPM_prompts.csv

# Python
__pycache__/
*.pyc
*.pyo
*.egg-info/
dist/
build/
.eggs/

# Environment
.env
*.env
.venv/
venv/

# IDE
.vscode/
.idea/
*.swp
*.swo
*~

# OS
.DS_Store
Thumbs.db

# Jupyter
.ipynb_checkpoints/

# Logs
*.log
wandb/