# Model checkpoints (too large for GitHub)
out/ckpt.pt
*.pt
# Released checkpoints under checkpoints/ are tracked (on Hugging Face)
!checkpoints/*.pt
!checkpoints/*.pth
# ROC/LES trajectory checkpoints (tracked on Hugging Face)
!ROC-Checkpoints/*.pt
!ROC-Checkpoints/*.pth

# Large data files
data/*/input.txt
data/*/input.csv
data/*/train.bin
data/*/val.bin
data/*/*.csv

# Large prompt files
MED4-PPIs-low-confidence_ppiGPLM_cleaned2_prompts.csv
MED4-PPIs-low-confidence_ppiGPLM_cleaned2_prompts.txt

# Python cache
__pycache__/
*.pyc

# Output files
*_output.csv
*_probabilities.csv
*_classifications.txt
LES_results*/

# OS files
.DS_Store
Thumbs.db

# Wandb logs
wandb/