Upload complete research archive under data/

.gitattributes

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data/Run 1/RESULT Run 1/.claude/launch.json

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+{
+  "version": "0.0.1",
+  "configurations": [
+    {
+      "name": "app",
+      "runtimeExecutable": "python3",
+      "runtimeArgs": ["-m", "http.server", "8765", "--bind", "127.0.0.1", "--directory", "app"],
+      "port": 8765
+    }
+  ]
+}

data/Run 1/RESULT Run 1/README.md

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+# Hierarchical Fracture Lab — deliverables
+
+Browser-based generative design and fracture-discovery platform for hierarchical cellular networks derived from the
+five supplied reference images, with a validated beam-network fracture solver, a complete computational study
+(345 logged runs + 68 archived preliminary runs), publication figures, movies, printable STL geometry, and a compiled
+LaTeX report.
+
+## Start here
+* **Application**: open `app/HierarchicalFractureLab.html` in a modern browser (Chrome/Edge/Firefox/Safari; no server or
+  internet needed — everything is inlined). Generate → Run. Panel 7 runs the validation suite; panel 9 exports data,
+  STL, SVG, PNG and movies; the "Study presets" menu in panel 2 loads the designs of the study and the print set.
+  URL options: `?preset=<designId>&autorun=1&replay=1&color=util|level|interface|N|disp|state|failOrder|thickness&view=iso&extrude=1`.
+* **Report**: `report/report.pdf` (source `report/report.tex`, tables in `report/tables/`, figures in `report/figures/`).
+* **Printable designs**: `stl/` — 12 designs × 4 thickening variants (`STL_README.md` explains each design and variant).
+* **Manifest**: `manifest.json` — versions, configuration, dates, parameter ranges, seeds and SHA-256 checksums of every file.
+
+## Layout
+```
+app/HierarchicalFractureLab.html   single-file application (core + Three.js r128 + OrbitControls + reference thumbnails)
+app/src/core/*.js                  solver core modules (RNG/geometry, generator, beam solver, fracture driver, metrics, validation, STL/SVG)
+app/src/hfx_core.js                built core (used by the app and by the Node study driver)
+app/src/ui/*.html|js               application UI (CSS/HTML skeleton, Three.js viewer, application logic)
+app/src/build.js                   build script (node build.js --app)
+app/SOLVER_DESCRIPTION.md          description of the numerical solver
+reference_images/                  the five reference images (originals + 512 px thumbnails used in the app)
+validation/                        run_validation.js, validation_results.json, validation_report.md (44 tests, all pass)
+study/hfx_batch.js                 parallel study driver (worker threads); plans/ stage 1–5 plan files; study_base.js
+study/experiment_log.jsonl         machine-readable log: one JSON line per run (params, seed, reason, hypothesis, metrics, files, checksums)
+study/runs/<runId>/                results.json, steps.csv, events.csv, members.csv, member_history.csv, geometry.json, snapshots.json, snapshot.png
+study/hypotheses.md                competing hypotheses recorded after stages 1–2 and their outcomes
+study/predictions.json|.md         holdout predictions recorded before stage 5 was run
+study/prelim/                      archived preliminary family (frame side walls) with its own log and runs
+analysis/*.py                      analysis and figure scripts (hfx_analysis, load_sharing, make_figures, make_tables, render_*)
+analysis/figures/                  all figures as PDF, SVG and PNG
+analysis/processed/                flat experiment table, design summary, load-sharing statistics, holdout comparison, key numbers
+analysis/gallery/                  generator gallery (contact sheet)
+movies/                            MP4 movies of complete runs (README.md)
+stl/                               STL set + stl_manifest.json + STL_README.md
+screenshots/                       application screenshots (take_screenshots.py: Playwright script that reproduces them)
+task_prompt.md                     the original task statement
+```
+
+## Reproducing
+```bash
+node app/src/build.js --app                 # rebuild hfx_core.js and the single-file app
+node validation/run_validation.js           # validation suite (Node)
+node study/hfx_batch.js study/plans/stage1_baseline.js   # ... stage2_recon.js, stage3_hypotheses.js, stage4_refine.js, stage5_holdout.js
+python3 analysis/load_sharing.py && python3 analysis/make_figures.py && python3 analysis/make_tables.py
+python3 analysis/render_run_images.py; bash analysis/render_all_movies.sh
+node stl/make_stl_set.js
+cd report && pdflatex report.tex (×3)
+```
+Requirements: Node ≥ 18 (study driver), Python 3 with numpy/pandas/scipy/matplotlib/Pillow (analysis), ffmpeg (movies),
+pdflatex (report). The application itself needs only a browser.
+
+## Units
+All simulator quantities are normalised (length W = 1, modulus E_s = 1, depth b_z = 1; force in E_s·W·b_z, energy in
+E_s·W²·b_z). Panel 5 of the application converts to physical units for a chosen modulus, width and depth.

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data/Run 1/RESULT Run 1/analysis/gallery.js

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+const fs=require('fs'), path=require('path');
+const HFX=require(path.join(__dirname,'..','app','src','hfx_core.js'));
+const out=path.join(__dirname,'gallery'); fs.mkdirSync(out,{recursive:true});
+const cases=[
+ ['ordered_D3b4', {depth:3,branching:4,disorder:0}],
+ ['ordered_D4b4_rt05', {depth:4,branching:4,disorder:0,thicknessRatio:0.5}],
+ ['ordered_D8b2', {depth:8,branching:2,disorder:0}],
+ ['ordered_D10b2', {depth:10,branching:2,disorder:0,thicknessRatio:0.7}],
+ ['dis035_D3b4', {depth:3,branching:4,disorder:0.35,seed:7}],
+ ['dis07_D3b4', {depth:3,branching:4,disorder:0.7,seed:7}],
+ ['dis10_D3b4', {depth:3,branching:4,disorder:1.0,seed:7}],
+ ['dis10_D4b4', {depth:4,branching:4,disorder:1.0,seed:3}],
+ ['dis10_D6b3', {depth:6,branching:3,disorder:1.0,seed:3,thicknessRatio:0.7}],
+ ['flat_D0_8x8', {n0x:8,n0y:8,depth:0,disorder:0}],
+ ['flat_D0_8x8_dis1', {n0x:8,n0y:8,depth:0,disorder:1,seed:2}],
+ ['stag_D3b4_dis0', {depth:3,branching:4,layout:'staggered',disorder:0}],
+ ['stag_D3b6_dis03', {depth:3,branching:6,layout:'staggered',disorder:0.3,seed:5}],
+ ['radial_D3b5_dis0', {depth:3,branching:5,layout:'radial',disorder:0}],
+ ['radial_D4b5_dis03', {depth:4,branching:5,layout:'radial',disorder:0.3,seed:4}],
+ ['red1_D3b4_dis0', {depth:3,branching:4,disorder:0,redundancy:1}],
+ ['red05_D3b4_dis05', {depth:3,branching:4,disorder:0.5,redundancy:0.5,seed:9}],
+ ['con07_D3b4_dis05', {depth:3,branching:4,disorder:0.5,connectivity:0.7,seed:9}],
+ ['notch_D3b4_dis035', {depth:3,branching:4,disorder:0.35,defectType:'notch',defectX:0.0,defectY:0.5,defectSize:0.12,seed:7}],
+ ['missing_D3b4', {depth:3,branching:4,disorder:0.35,missingFraction:0.08,seed:7}],
+ ['n0_2x3_D2b4_dis02', {n0x:2,n0y:3,depth:2,branching:4,disorder:0.2,seed:11}],
+ ['fullframe_D3b4', {depth:3,branching:4,disorder:0.3,frameMode:'full',seed:12}],
+];
+const lines=[];
+for (const [name,pp] of cases){ const st=HFX.generateStructure(Object.assign({relDensity:0.2},pp));
+ fs.writeFileSync(path.join(out,name+'.json'),JSON.stringify(HFX.geometryJSON(st)));
+ lines.push(name.padEnd(22)+' nodes='+String(st.stats.nodes).padStart(5)+' el='+String(st.stats.elements).padStart(5)+' if='+String(st.stats.interfaces).padStart(4)+' rho='+st.stats.relDensityDesign.toFixed(4)+' grip='+st.stats.gripLineMaterial.toFixed(4)+' t0='+st.t0.toFixed(4)+' tmin='+st.stats.tMin.toExponential(2)+' wallSl='+st.stats.minSlendernessLevel.toFixed(1)+' elSl='+st.stats.minElementSlenderness.toFixed(1)+' levels='+st.levelStats.map(l=>l.materialFraction.toFixed(2)).join('/'));
+}
+console.log(lines.join('\n'));

data/Run 1/RESULT Run 1/analysis/gallery/con07_D3b4_dis05.json

@@ -0,0 +1 @@
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