Instructions to use macwiatrak/bacformer-causal-MAG with libraries, inference providers, notebooks, and local apps. Follow these links to get started.

Libraries

How to use macwiatrak/bacformer-causal-MAG with Transformers:

# Use a pipeline as a high-level helper
from transformers import pipeline

pipe = pipeline("text-generation", model="macwiatrak/bacformer-causal-MAG", trust_remote_code=True)

# Load model directly
from transformers import AutoModelForCausalLM
model = AutoModelForCausalLM.from_pretrained("macwiatrak/bacformer-causal-MAG", trust_remote_code=True, dtype="auto")

Notebooks
Google Colab
Kaggle
Local Apps Settings

vLLM

How to use macwiatrak/bacformer-causal-MAG with vLLM:

Install from pip and serve model

# Install vLLM from pip:
pip install vllm
# Start the vLLM server:
vllm serve "macwiatrak/bacformer-causal-MAG"
# Call the server using curl (OpenAI-compatible API):
curl -X POST "http://localhost:8000/v1/completions" \
	-H "Content-Type: application/json" \
	--data '{
		"model": "macwiatrak/bacformer-causal-MAG",
		"prompt": "Once upon a time,",
		"max_tokens": 512,
		"temperature": 0.5
	}'

Use Docker

docker model run hf.co/macwiatrak/bacformer-causal-MAG

SGLang

How to use macwiatrak/bacformer-causal-MAG with SGLang:

Install from pip and serve model

# Install SGLang from pip:
pip install sglang
# Start the SGLang server:
python3 -m sglang.launch_server \
    --model-path "macwiatrak/bacformer-causal-MAG" \
    --host 0.0.0.0 \
    --port 30000
# Call the server using curl (OpenAI-compatible API):
curl -X POST "http://localhost:30000/v1/completions" \
	-H "Content-Type: application/json" \
	--data '{
		"model": "macwiatrak/bacformer-causal-MAG",
		"prompt": "Once upon a time,",
		"max_tokens": 512,
		"temperature": 0.5
	}'

Use Docker images

docker run --gpus all \
    --shm-size 32g \
    -p 30000:30000 \
    -v ~/.cache/huggingface:/root/.cache/huggingface \
    --env "HF_TOKEN=<secret>" \
    --ipc=host \
    lmsysorg/sglang:latest \
    python3 -m sglang.launch_server \
        --model-path "macwiatrak/bacformer-causal-MAG" \
        --host 0.0.0.0 \
        --port 30000
# Call the server using curl (OpenAI-compatible API):
curl -X POST "http://localhost:30000/v1/completions" \
	-H "Content-Type: application/json" \
	--data '{
		"model": "macwiatrak/bacformer-causal-MAG",
		"prompt": "Once upon a time,",
		"max_tokens": 512,
		"temperature": 0.5
	}'

Docker Model Runner
How to use macwiatrak/bacformer-causal-MAG with Docker Model Runner:
```
docker model run hf.co/macwiatrak/bacformer-causal-MAG
```

bacformer-causal-MAG / config.json

macwiatrak

Upload BacformerForCausalGM

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	{
	"alpha_contrastive_loss": 0.5,
	"architectures": [
	"BacformerForCausalGM"
	],
	"attention_probs_dropout_prob": 0.1,
	"auto_map": {
	"AutoConfig": "configuration_bacformer.BacformerConfig",
	"AutoModelForCausalLM": "modeling_bacformer.BacformerForCausalGM"
	},
	"batch_size": 1,
	"ckpt_path": null,
	"dataloader_num_workers": 10,
	"early_stopping_patience": 8,
	"end_token_id": 5,
	"eval_steps": 4000,
	"gradient_accumulation_steps": 8,
	"hidden_dropout_prob": 0.1,
	"hidden_size": 480,
	"id2label": {
	"0": "LABEL_0"
	},
	"initializer_range": 0.02,
	"input_dir": "/rds/user/mw896/rds-flotolab-9X9gY1OFt4M/projects/bacformer/input-data/eval-genomes/",
	"intermediate_size": 1280,
	"is_causal_gm": true,
	"label2id": {
	"LABEL_0": 0
	},
	"layer_norm_eps": 1e-12,
	"logging_steps": 500,
	"lr": 0.00015,
	"mask_token_id": 1,
	"max_epochs": 10,
	"max_grad_norm": 2.0,
	"max_n_contigs": 1000,
	"max_n_proteins": 6000,
	"max_position_embeddings": 6000,
	"max_token_type_embeddings": 1000,
	"mgm_probability": 0.0,
	"model_type": "bacformer",
	"monitor_metric": "loss",
	"n_nodes": 1,
	"n_total_samples": 1203731,
	"num_attention_heads": 8,
	"num_hidden_layers": 12,
	"num_special_tokens": 6,
	"output_dir": "/rds/user/mw896/rds-flotolab-9X9gY1OFt4M/projects/bacformer/output-data/all-genomes/runs-causal/12L-full-data-rotary-lr15e-5/",
	"pad_token_id": 0,
	"pretrained_model_dir": null,
	"problem_type": "single_label_classification",
	"prot_emb_token_id": 4,
	"protein_clusters_vocab_size": 50000,
	"random_state": 30,
	"return_attn_weights": false,
	"return_dict": false,
	"save_steps": 4000,
	"special_tokens_dict": {
	"CLS": 2,
	"END": 5,
	"MASK": 1,
	"PAD": 0,
	"PROT_EMB": 4,
	"SEP": 3
	},
	"test": false,
	"test_after_train": false,
	"torch_dtype": "float32",
	"train_subset_prop": 1.0,
	"transformers_version": "4.50.3",
	"warmup_proportion": 0.1,
	"weight_decay": 0.01
	}