Update app.py
Browse files
app.py
CHANGED
|
@@ -28,7 +28,7 @@ print(f"Loading model repo={REPO_ID} epoch={'latest' if EPOCH is None else EPOCH
|
|
| 28 |
pipeline = Phase3Pipeline(
|
| 29 |
repo_id=REPO_ID,
|
| 30 |
epoch=EPOCH,
|
| 31 |
-
mc_passes=
|
| 32 |
uncertainty_threshold=0.05,
|
| 33 |
token=TOKEN,
|
| 34 |
)
|
|
@@ -96,70 +96,6 @@ def _build_text(r: dict, mc_passes: int) -> str:
|
|
| 96 |
return "\n".join(lines)
|
| 97 |
|
| 98 |
|
| 99 |
-
def _rejection_text(confidence: float, reason: str) -> str:
|
| 100 |
-
lines = [
|
| 101 |
-
"=" * 52,
|
| 102 |
-
" GLAUCOMA CDSS β INPUT REJECTED",
|
| 103 |
-
"=" * 52,
|
| 104 |
-
"",
|
| 105 |
-
" This image does not appear to be a retinal",
|
| 106 |
-
" fundus photograph.",
|
| 107 |
-
"",
|
| 108 |
-
f" Validator confidence : {confidence:.4f}",
|
| 109 |
-
f" Validator detail : {reason}",
|
| 110 |
-
"",
|
| 111 |
-
" Please upload a proper retinal fundus image.",
|
| 112 |
-
" Accepted sources:",
|
| 113 |
-
" - Fundus camera photograph",
|
| 114 |
-
" - JPEG or PNG format",
|
| 115 |
-
" - Clear view of the optic disc",
|
| 116 |
-
"",
|
| 117 |
-
"=" * 52,
|
| 118 |
-
]
|
| 119 |
-
return "\n".join(lines)
|
| 120 |
-
|
| 121 |
-
|
| 122 |
-
|
| 123 |
-
# ββ PDF BUILDER βββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 124 |
-
def _build_pdf(text: str):
|
| 125 |
-
|
| 126 |
-
try:
|
| 127 |
-
from fpdf import FPDF
|
| 128 |
-
|
| 129 |
-
# Remove unsupported unicode characters
|
| 130 |
-
safe_text = (
|
| 131 |
-
text.replace("β", "-")
|
| 132 |
-
.replace("β’", "-")
|
| 133 |
-
.replace("β", "->")
|
| 134 |
-
)
|
| 135 |
-
|
| 136 |
-
pdf = FPDF()
|
| 137 |
-
|
| 138 |
-
pdf.add_page()
|
| 139 |
-
|
| 140 |
-
pdf.set_auto_page_break(auto=True, margin=15)
|
| 141 |
-
|
| 142 |
-
pdf.set_font("Courier", size=10)
|
| 143 |
-
|
| 144 |
-
for line in safe_text.splitlines():
|
| 145 |
-
pdf.multi_cell(0, 6, txt=line)
|
| 146 |
-
|
| 147 |
-
out = tempfile.NamedTemporaryFile(
|
| 148 |
-
delete=False,
|
| 149 |
-
suffix=".pdf"
|
| 150 |
-
)
|
| 151 |
-
|
| 152 |
-
pdf.output(out.name)
|
| 153 |
-
|
| 154 |
-
return out.name
|
| 155 |
-
|
| 156 |
-
except Exception as e:
|
| 157 |
-
|
| 158 |
-
print("PDF generation failed:", repr(e))
|
| 159 |
-
|
| 160 |
-
return None
|
| 161 |
-
|
| 162 |
-
|
| 163 |
# ββ INFERENCE βββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 164 |
def analyse(file_path):
|
| 165 |
if file_path is None:
|
|
@@ -175,13 +111,10 @@ def analyse(file_path):
|
|
| 175 |
print("Pipeline inference completed.")
|
| 176 |
|
| 177 |
text = _build_text(result["report"], pipeline.mc_passes)
|
| 178 |
-
pdf = _build_pdf(text)
|
| 179 |
-
|
| 180 |
status = "Analysis completed successfully."
|
| 181 |
-
|
| 182 |
-
status = "Analysis completed, but PDF generation failed."
|
| 183 |
|
| 184 |
-
return text,
|
| 185 |
|
| 186 |
except Exception as e:
|
| 187 |
print(f"Analysis error: {e}")
|
|
@@ -224,7 +157,6 @@ with gr.Blocks(title="Glaucoma CDSS") as demo:
|
|
| 224 |
interactive=False,
|
| 225 |
)
|
| 226 |
|
| 227 |
-
pdf_out = gr.File(label="Download PDF Report")
|
| 228 |
|
| 229 |
gr.Markdown(
|
| 230 |
"_Research prototype β NOT a medical device. "
|
|
@@ -327,7 +259,7 @@ All clinical decisions must be made by a qualified ophthalmologist.
|
|
| 327 |
).then(
|
| 328 |
fn=analyse,
|
| 329 |
inputs=[file_in],
|
| 330 |
-
outputs=[report_box,
|
| 331 |
).then(
|
| 332 |
fn=set_ready,
|
| 333 |
inputs=None,
|
|
|
|
| 28 |
pipeline = Phase3Pipeline(
|
| 29 |
repo_id=REPO_ID,
|
| 30 |
epoch=EPOCH,
|
| 31 |
+
mc_passes=2,
|
| 32 |
uncertainty_threshold=0.05,
|
| 33 |
token=TOKEN,
|
| 34 |
)
|
|
|
|
| 96 |
return "\n".join(lines)
|
| 97 |
|
| 98 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 99 |
# ββ INFERENCE βββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 100 |
def analyse(file_path):
|
| 101 |
if file_path is None:
|
|
|
|
| 111 |
print("Pipeline inference completed.")
|
| 112 |
|
| 113 |
text = _build_text(result["report"], pipeline.mc_passes)
|
|
|
|
|
|
|
| 114 |
status = "Analysis completed successfully."
|
| 115 |
+
|
|
|
|
| 116 |
|
| 117 |
+
return text, status
|
| 118 |
|
| 119 |
except Exception as e:
|
| 120 |
print(f"Analysis error: {e}")
|
|
|
|
| 157 |
interactive=False,
|
| 158 |
)
|
| 159 |
|
|
|
|
| 160 |
|
| 161 |
gr.Markdown(
|
| 162 |
"_Research prototype β NOT a medical device. "
|
|
|
|
| 259 |
).then(
|
| 260 |
fn=analyse,
|
| 261 |
inputs=[file_in],
|
| 262 |
+
outputs=[report_box, status_box],
|
| 263 |
).then(
|
| 264 |
fn=set_ready,
|
| 265 |
inputs=None,
|