feat: DoctoBERT Fill-Mask demo
Browse filesSwitch to doctolib-lab/doctomodernbert-fr-base (ModernBERT, [MASK]
token), translate the UI to English, and replace the raw JSON output
with a styled prediction card matching the DoctoBERT Diffusion demo's
dark palette and accent gradient. Auto-run predictions on load and on
example click instead of leaving the card blank.
Runs on ZeroGPU when deployed; resolves the device from
torch.cuda.is_available() rather than guessing from whether the
spaces package merely imported, which adapts correctly across
cpu-basic, ZeroGPU, and local MPS/CPU with no crashes.
README.md
CHANGED
|
@@ -1,19 +1,28 @@
|
|
| 1 |
---
|
| 2 |
-
title: DoctoBERT-
|
| 3 |
-
emoji:
|
| 4 |
-
colorFrom:
|
| 5 |
colorTo: purple
|
| 6 |
sdk: gradio
|
| 7 |
sdk_version: 6.19.0
|
| 8 |
app_file: app.py
|
| 9 |
-
short_description: Fill-mask demo for French medical
|
| 10 |
python_version: "3.12"
|
| 11 |
startup_duration_timeout: 30m
|
| 12 |
---
|
| 13 |
|
| 14 |
-
# DoctoBERT-
|
| 15 |
|
| 16 |
-
|
| 17 |
-
containing a `
|
|
|
|
| 18 |
|
| 19 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
---
|
| 2 |
+
title: DoctoBERT Fill-Mask
|
| 3 |
+
emoji: 🩺
|
| 4 |
+
colorFrom: indigo
|
| 5 |
colorTo: purple
|
| 6 |
sdk: gradio
|
| 7 |
sdk_version: 6.19.0
|
| 8 |
app_file: app.py
|
| 9 |
+
short_description: Fill-mask demo for a French medical ModernBERT
|
| 10 |
python_version: "3.12"
|
| 11 |
startup_duration_timeout: 30m
|
| 12 |
---
|
| 13 |
|
| 14 |
+
# 🩺 DoctoBERT Fill-Mask
|
| 15 |
|
| 16 |
+
Fill-mask demo of [doctolib-lab/doctomodernbert-fr-base](https://huggingface.co/doctolib-lab/doctomodernbert-fr-base),
|
| 17 |
+
a French medical **ModernBERT** encoder. Write a sentence containing a `[MASK]` token and the
|
| 18 |
+
model predicts the most likely words, ranked by probability.
|
| 19 |
|
| 20 |
+
Runs on **ZeroGPU** when deployed (via `@spaces.GPU`); falls back to MPS/CPU when run locally.
|
| 21 |
+
|
| 22 |
+
## Run locally
|
| 23 |
+
|
| 24 |
+
```bash
|
| 25 |
+
uv venv --python 3.12 .venv
|
| 26 |
+
uv pip install torch transformers gradio
|
| 27 |
+
python app.py
|
| 28 |
+
```
|
app.py
CHANGED
|
@@ -1,136 +1,172 @@
|
|
| 1 |
-
|
| 2 |
-
|
| 3 |
-
|
| 4 |
-
|
| 5 |
-
import torch.nn.functional as F
|
| 6 |
-
|
| 7 |
-
MODEL_ID = "doctolib-lab/doctobert-fr-base"
|
| 8 |
-
|
| 9 |
-
tokenizer = AutoTokenizer.from_pretrained(MODEL_ID)
|
| 10 |
-
model = AutoModelForMaskedLM.from_pretrained(MODEL_ID).to("cuda")
|
| 11 |
-
model.eval()
|
| 12 |
-
|
| 13 |
-
MASK_TOKEN_DISPLAY = "<mask>"
|
| 14 |
-
MASK_TOKEN_ID = tokenizer.mask_token_id
|
| 15 |
|
|
|
|
|
|
|
|
|
|
| 16 |
|
| 17 |
-
|
| 18 |
-
def predict_mask(text: str, top_k: int = 5):
|
| 19 |
-
"""Predict the most likely tokens to fill the <mask> in a French medical sentence.
|
| 20 |
|
| 21 |
-
|
| 22 |
-
|
| 23 |
-
|
| 24 |
-
|
| 25 |
-
|
| 26 |
-
|
| 27 |
-
|
| 28 |
-
|
| 29 |
-
|
| 30 |
-
|
| 31 |
-
|
| 32 |
-
|
| 33 |
-
|
| 34 |
-
|
| 35 |
-
|
| 36 |
-
|
| 37 |
-
|
| 38 |
-
|
| 39 |
-
|
| 40 |
-
|
| 41 |
-
sep_id = tokenizer.sep_token_id
|
| 42 |
-
input_ids = [cls_id] + left_ids + [MASK_TOKEN_ID] + right_ids + [sep_id]
|
| 43 |
-
input_ids = torch.tensor([input_ids], device="cuda")
|
| 44 |
-
attention_mask = torch.ones_like(input_ids)
|
| 45 |
|
| 46 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 47 |
|
| 48 |
with torch.no_grad():
|
| 49 |
-
logits = model(
|
| 50 |
-
|
| 51 |
-
|
| 52 |
-
|
| 53 |
-
|
| 54 |
-
|
| 55 |
-
|
| 56 |
-
|
| 57 |
-
|
| 58 |
-
|
| 59 |
-
|
| 60 |
-
|
| 61 |
-
|
| 62 |
-
# Build the full sequence with this token substituted
|
| 63 |
-
filled_ids = input_ids[0].clone()
|
| 64 |
-
filled_ids[mask_pos] = token_id
|
| 65 |
-
sequence = tokenizer.decode(filled_ids, skip_special_tokens=True).strip()
|
| 66 |
-
results.append({
|
| 67 |
-
"token": token,
|
| 68 |
-
"score": round(prob, 4),
|
| 69 |
-
"sequence": sequence,
|
| 70 |
-
})
|
| 71 |
-
|
| 72 |
-
best = results[0]["sequence"] if results else ""
|
| 73 |
-
|
| 74 |
-
return {"predictions": results}, best
|
| 75 |
-
|
| 76 |
-
|
| 77 |
CSS = """
|
| 78 |
-
#col
|
| 79 |
-
.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 80 |
"""
|
| 81 |
|
| 82 |
-
|
| 83 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 84 |
gr.Markdown(
|
| 85 |
-
""
|
| 86 |
-
|
| 87 |
-
|
| 88 |
-
|
| 89 |
-
|
| 90 |
-
|
| 91 |
-
|
| 92 |
-
🔗 [Modèle sur le Hub](https://huggingface.co/doctolib-lab/doctobert-fr-base)
|
| 93 |
-
"""
|
| 94 |
)
|
| 95 |
-
|
| 96 |
with gr.Row():
|
| 97 |
-
|
| 98 |
-
label="
|
| 99 |
-
|
|
|
|
| 100 |
scale=4,
|
| 101 |
)
|
| 102 |
-
|
| 103 |
-
|
| 104 |
-
|
| 105 |
-
|
| 106 |
-
|
| 107 |
-
|
| 108 |
-
|
| 109 |
-
|
| 110 |
-
best_pred_output = gr.Textbox(label="Meilleure prédiction", interactive=False)
|
| 111 |
-
predictions_output = gr.JSON(label="Top-k prédictions")
|
| 112 |
-
|
| 113 |
-
run_btn.click(
|
| 114 |
-
fn=predict_mask,
|
| 115 |
-
inputs=[text_input, top_k_input],
|
| 116 |
-
outputs=[predictions_output, best_pred_output],
|
| 117 |
-
api_name="predict",
|
| 118 |
-
)
|
| 119 |
-
|
| 120 |
-
gr.Examples(
|
| 121 |
-
examples=[
|
| 122 |
-
[f"Le patient souffre d'une {MASK_TOKEN_DISPLAY} aiguë.", 5],
|
| 123 |
-
[f"Le médecin prescrit un traitement pour l'{MASK_TOKEN_DISPLAY}.", 5],
|
| 124 |
-
[f"La dose recommandée est de {MASK_TOKEN_DISPLAY} mg par jour.", 5],
|
| 125 |
-
[f"Le patient présente des symptômes de {MASK_TOKEN_DISPLAY} chronique.", 5],
|
| 126 |
-
[f"L'examen clinique révèle une {MASK_TOKEN_DISPLAY} au niveau du thorax.", 5],
|
| 127 |
-
],
|
| 128 |
-
inputs=[text_input, top_k_input],
|
| 129 |
-
outputs=[predictions_output, best_pred_output],
|
| 130 |
-
fn=predict_mask,
|
| 131 |
-
cache_examples=True,
|
| 132 |
-
cache_mode="lazy",
|
| 133 |
-
)
|
| 134 |
|
| 135 |
if __name__ == "__main__":
|
| 136 |
-
demo.launch(
|
|
|
|
| 1 |
+
# ZeroGPU: `spaces` must be imported before torch. Present on any HF Spaces
|
| 2 |
+
# Gradio SDK image regardless of hardware tier; absent locally.
|
| 3 |
+
try:
|
| 4 |
+
import spaces
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 5 |
|
| 6 |
+
_HAS_SPACES = True
|
| 7 |
+
except ImportError:
|
| 8 |
+
_HAS_SPACES = False
|
| 9 |
|
| 10 |
+
import html
|
|
|
|
|
|
|
| 11 |
|
| 12 |
+
import gradio as gr
|
| 13 |
+
import torch
|
| 14 |
+
import torch.nn.functional as F
|
| 15 |
+
from transformers import AutoModelForMaskedLM, AutoTokenizer
|
| 16 |
+
|
| 17 |
+
MODEL_ID = "doctolib-lab/doctomodernbert-fr-base"
|
| 18 |
+
|
| 19 |
+
# torch.cuda.is_available() is the single source of truth for whether a CUDA
|
| 20 |
+
# device is actually usable here -- true on real GPU hardware, true on a
|
| 21 |
+
# properly-attached ZeroGPU Space (its emulation mode makes this report
|
| 22 |
+
# correctly outside @spaces.GPU functions too), false on cpu-basic. No need to
|
| 23 |
+
# infer it from whether `spaces` merely imported, which says nothing about
|
| 24 |
+
# the Space's actual hardware tier.
|
| 25 |
+
if torch.cuda.is_available():
|
| 26 |
+
DEVICE = "cuda"
|
| 27 |
+
elif torch.backends.mps.is_available():
|
| 28 |
+
DEVICE = "mps"
|
| 29 |
+
else:
|
| 30 |
+
DEVICE = "cpu"
|
| 31 |
+
print(f"[doctobert-fill-mask] device={DEVICE} has_spaces={_HAS_SPACES}", flush=True)
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32 |
|
| 33 |
+
tokenizer = AutoTokenizer.from_pretrained(MODEL_ID)
|
| 34 |
+
model = AutoModelForMaskedLM.from_pretrained(MODEL_ID).to(DEVICE).eval()
|
| 35 |
+
MASK = tokenizer.mask_token # ModernBERT -> "[MASK]"
|
| 36 |
+
|
| 37 |
+
|
| 38 |
+
def gpu(fn):
|
| 39 |
+
"""@spaces.GPU is documented as effect-free outside real ZeroGPU hardware,
|
| 40 |
+
so it's always safe to apply once `spaces` is importable; no-op locally,
|
| 41 |
+
where the package isn't installed at all."""
|
| 42 |
+
return spaces.GPU(duration=15)(fn) if _HAS_SPACES else fn
|
| 43 |
+
|
| 44 |
+
|
| 45 |
+
def _card(inner: str) -> str:
|
| 46 |
+
return f'<div class="fm">{inner}</div>'
|
| 47 |
+
|
| 48 |
+
|
| 49 |
+
def _err(msg: str) -> str:
|
| 50 |
+
return _card(f'<div class="fm-err">{html.escape(msg)}</div>')
|
| 51 |
+
|
| 52 |
+
|
| 53 |
+
def _render(text: str, toks: list[str], scores: list[float]) -> str:
|
| 54 |
+
left, right = text.split(MASK, 1)
|
| 55 |
+
top1 = toks[0] if toks else ""
|
| 56 |
+
sentence = (
|
| 57 |
+
f'<span class="fm-txt">{html.escape(left)}</span>'
|
| 58 |
+
+ f'<span class="fm-slot">{html.escape(top1) or "·"}</span>'
|
| 59 |
+
+ f'<span class="fm-txt">{html.escape(right)}</span>'
|
| 60 |
+
)
|
| 61 |
+
maxp = max(scores) if scores else 1.0
|
| 62 |
+
rows = []
|
| 63 |
+
for r, (t, s) in enumerate(zip(toks, scores), 1):
|
| 64 |
+
w = (s / maxp * 100) if maxp else 0
|
| 65 |
+
rows.append(
|
| 66 |
+
f'<div class="fm-row"><span class="fm-rank">{r}</span>'
|
| 67 |
+
f'<span class="fm-tok">{html.escape(t) or "∅"}</span>'
|
| 68 |
+
f'<div class="fm-bar"><i style="--w:{w:.1f}%"></i></div>'
|
| 69 |
+
f'<span class="fm-pct">{s * 100:.1f}%</span></div>'
|
| 70 |
+
)
|
| 71 |
+
return _card(
|
| 72 |
+
f'<div class="fm-sentence">{sentence}</div>'
|
| 73 |
+
'<div class="fm-cap">Top predictions</div>' + "".join(rows)
|
| 74 |
+
)
|
| 75 |
+
|
| 76 |
+
|
| 77 |
+
@gpu
|
| 78 |
+
def predict(text: str, top_k: int = 8) -> str:
|
| 79 |
+
text = (text or "").strip()
|
| 80 |
+
if not text:
|
| 81 |
+
return _err("Type a sentence first.")
|
| 82 |
+
if MASK not in text:
|
| 83 |
+
return _err(f"Your sentence must contain a {MASK} token.")
|
| 84 |
+
if text.count(MASK) != 1:
|
| 85 |
+
return _err(f"Use exactly one {MASK} token.")
|
| 86 |
+
|
| 87 |
+
enc = tokenizer(text, return_tensors="pt").to(DEVICE)
|
| 88 |
+
ids = enc["input_ids"][0]
|
| 89 |
+
pos = (ids == tokenizer.mask_token_id).nonzero(as_tuple=True)[0]
|
| 90 |
+
if pos.numel() == 0:
|
| 91 |
+
return _err("Could not locate the mask after tokenization.")
|
| 92 |
+
mp = int(pos[0])
|
| 93 |
|
| 94 |
with torch.no_grad():
|
| 95 |
+
logits = model(**enc).logits
|
| 96 |
+
probs = F.softmax(logits[0, mp].float(), dim=-1)
|
| 97 |
+
k = min(int(top_k), probs.shape[-1])
|
| 98 |
+
tp, ti = torch.topk(probs, k)
|
| 99 |
+
toks = [
|
| 100 |
+
tokenizer.decode([i], clean_up_tokenization_spaces=False).strip()
|
| 101 |
+
for i in ti.tolist()
|
| 102 |
+
]
|
| 103 |
+
scores = [float(x) for x in tp.tolist()]
|
| 104 |
+
return _render(text, toks, scores)
|
| 105 |
+
|
| 106 |
+
|
| 107 |
+
# Palette matches the DoctoBERT Diffusion demo (dark card, accent gradient bars).
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 108 |
CSS = """
|
| 109 |
+
#col { max-width: 900px; margin: 0 auto; }
|
| 110 |
+
.fm {
|
| 111 |
+
--fg:#e6edf6; --dim:#7d8aa0; --line:#1e2636; --accent:#7aa2ff; --accent2:#b78bff;
|
| 112 |
+
background: linear-gradient(180deg,#0e1420,#0b0f17); border:1px solid var(--line);
|
| 113 |
+
border-radius:14px; padding:18px 20px; color:var(--fg);
|
| 114 |
+
font-family: ui-monospace,"JetBrains Mono",Menlo,Consolas,monospace;
|
| 115 |
+
}
|
| 116 |
+
.fm-sentence { font-size:18px; line-height:1.9; margin-bottom:14px; }
|
| 117 |
+
/* Gradio's own text color otherwise wins on the bare text nodes; force ours.
|
| 118 |
+
Blue accent matches the DoctoBERT Diffusion demo's prompt text. */
|
| 119 |
+
.fm-txt { color: var(--accent) !important; }
|
| 120 |
+
.fm-slot { background:linear-gradient(90deg,var(--accent),var(--accent2)); color:#0b0f17;
|
| 121 |
+
font-weight:600; padding:1px 9px; border-radius:6px; }
|
| 122 |
+
.fm-cap { color:var(--dim) !important; font-size:12px; text-transform:uppercase;
|
| 123 |
+
letter-spacing:.08em; margin:6px 0 10px; }
|
| 124 |
+
.fm-row { display:flex; align-items:center; gap:12px; margin:7px 0; font-size:14px; }
|
| 125 |
+
.fm-rank { color:var(--dim) !important; width:1.5em; text-align:right; }
|
| 126 |
+
/* Token + probability are the actual content, not secondary metadata -- keep
|
| 127 |
+
them fully bright (and !important, like .fm-txt) regardless of bar size. */
|
| 128 |
+
.fm-tok { min-width:130px; color:var(--fg) !important; overflow:hidden;
|
| 129 |
+
text-overflow:ellipsis; white-space:nowrap; }
|
| 130 |
+
.fm-bar { flex:1; height:10px; background:#182034; border-radius:6px; overflow:hidden; }
|
| 131 |
+
.fm-bar>i { display:block; height:100%; width:var(--w);
|
| 132 |
+
background:linear-gradient(90deg,var(--accent),var(--accent2)); border-radius:6px;
|
| 133 |
+
animation: fmgrow .6s cubic-bezier(.2,.8,.2,1); }
|
| 134 |
+
@keyframes fmgrow { from { width:0 } }
|
| 135 |
+
.fm-pct { color:var(--fg) !important; width:4.5em; text-align:right; font-weight:600; }
|
| 136 |
+
.fm-err { color:#ff6b6b !important; }
|
| 137 |
"""
|
| 138 |
|
| 139 |
+
EXAMPLES = [
|
| 140 |
+
f"Le patient présente une douleur {MASK} aiguë.",
|
| 141 |
+
f"Le médecin a prescrit un {MASK} pour traiter l'infection.",
|
| 142 |
+
f"Une douleur thoracique irradiant vers le bras gauche évoque un {MASK} du myocarde.",
|
| 143 |
+
f"Les analyses sanguines ont révélé un taux élevé de {MASK}.",
|
| 144 |
+
]
|
| 145 |
+
|
| 146 |
+
with gr.Blocks(title="DoctoBERT Fill-Mask") as demo:
|
| 147 |
+
with gr.Column(elem_id="col"):
|
| 148 |
gr.Markdown(
|
| 149 |
+
"# 🩺 DoctoBERT Fill-Mask\n"
|
| 150 |
+
"Fill-mask demo of "
|
| 151 |
+
f"[doctolib-lab/doctomodernbert-fr-base](https://huggingface.co/{MODEL_ID}), "
|
| 152 |
+
"a French medical ModernBERT encoder.\n\n"
|
| 153 |
+
f"Write a sentence with a `{MASK}` token and the model predicts the most likely "
|
| 154 |
+
"words, ranked by probability."
|
|
|
|
|
|
|
|
|
|
| 155 |
)
|
|
|
|
| 156 |
with gr.Row():
|
| 157 |
+
inp = gr.Textbox(
|
| 158 |
+
label=f"Sentence (with {MASK})",
|
| 159 |
+
value=EXAMPLES[0],
|
| 160 |
+
placeholder=f"Le patient souffre d'une {MASK} aiguë.",
|
| 161 |
scale=4,
|
| 162 |
)
|
| 163 |
+
btn = gr.Button("Predict", variant="primary", scale=1)
|
| 164 |
+
with gr.Accordion("Options", open=False):
|
| 165 |
+
topk = gr.Slider(1, 20, value=8, step=1, label="Top-k predictions")
|
| 166 |
+
out = gr.HTML()
|
| 167 |
+
gr.Examples(EXAMPLES, inputs=inp)
|
| 168 |
+
btn.click(predict, [inp, topk], out)
|
| 169 |
+
inp.submit(predict, [inp, topk], out)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 170 |
|
| 171 |
if __name__ == "__main__":
|
| 172 |
+
demo.launch(theme=gr.themes.Soft(), css=CSS, show_error=True)
|