from batchgenerators.utilities.file_and_folder_operations import * from nnunetv2.batch_running.collect_results_custom_Decathlon import collect_results, summarize from nnunetv2.paths import nnUNet_results if __name__ == '__main__': use_these_trainers = { 'nnUNetTrainer': ('nnUNetPlans', ), } all_results_file = join(nnUNet_results, 'hrnet_results.csv') datasets = [2, 3, 4, 17, 20, 24, 27, 38, 55, 64, 82] collect_results(use_these_trainers, datasets, all_results_file) folds = (0, ) configs = ('2d', ) output_file = join(nnUNet_results, 'hrnet_results_summary_fold0.csv') summarize(all_results_file, output_file, folds, configs, datasets, use_these_trainers)