Pre-download protenix weights from HF Hub; ByteDance CDN is geo-blocked

Increase PROTENIX_TIMEOUT to 1200s: first run needs JIT compile + weight download

Add ninja to deps: needed for torch cpp_extension JIT compile of FusedLayerNorm

Use biotite>=1.0 (not <1.0): protenix 2.0.0 needs 1.x PDBX API

Install protenix==2.0.0 with --ignore-requires-python; pin model name

Revert to PyPI protenix install; add runner to guard check

Bypass protenix binary: invoke runner.batch_inference via Python directly

Install protenix from ByteDance GitHub, not PyPI

Pin protenix==2.0.0, add version guard, dump --help on CLI error

Fix biotite install: use <1.0 to avoid numpy>=2.0 conflict

Fix protenix dep guard: check biotite too so partial installs re-run

Install protenix binary first, then deps one-by-one to survive partial failures

Fix indentation: protenix binary lookup was dedented out of try block

Fix protenix binary path: derive from sys.executable instead of relying on PATH

Install protenix deps at startup without upgrading torch/DGL stack

Debug: return errors as output instead of raising to surface protenix failure details

Auto-install protenix on startup without touching torch/DGL stack

Add Protenix v2 structure prediction tab to Gradio app

Add Protenix v2 FastAPI folding endpoint

Set font to Arial in Soft theme

Add missing runtime deps: matplotlib, pandas, scipy, python-dateutil

Fix DGL install: use --find-links for CUDA wheels, torch 2.4.0

Upgrade to Gradio 6.9.0 with full API migration

Fix build: pin Python 3.10, fix Gradio version, move deps to requirements.txt

Update requirements.txt

Update requirements.txt

Update app.py

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Update README.md

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to fix error with pydantic validation in gradio<3.36.1 (#7)

bug fix

new features

added new func

Update requirements.txt