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V5.1: ERR-17 disk-safe training (shard cleanup after GPU load)
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"""
Hayat Elixir AI V5 - Meditron3-70B QLoRA Fine-Tuning Script
ERROR-PROOF v2 — addresses all 17 known HF Space errors
February 2026
NEW in v2:
- ERR-17 FIX: Shard-by-shard disk management. Downloads model in streaming mode,
deletes cached shards after quantization to keep disk under 10GB at all times.
Prevents the infinite restart loop caused by 135GB model exceeding ephemeral disk.
CORE RULES APPLIED:
- ERR-03/15: Single A100-80GB, gradient_checkpointing, batch_size=1
- ERR-06: total_memory (not total_mem)
- ERR-09: trl==0.9.6 API (params in SFTTrainer, not SFTConfig)
- ERR-11/12: Single GPU only — NO DDP, NO device_map="auto" for multi-GPU
- ERR-16: Flask health server on port 7860
- ERR-17: Disk-safe model loading with shard cleanup
"""
import os
import json
import time
import gc
import glob
import shutil
import torch
import threading
from flask import Flask, jsonify
from datetime import datetime
from huggingface_hub import HfApi, login, snapshot_download
# ========== CONFIGURATION ==========
MODEL_ID = "OpenMeditron/Meditron3-70B"
DATASET_PATH = "/app/hayat_writer_v5_MASTER.jsonl"
OUTPUT_DIR = "/app/output"
ADAPTER_REPO = "mostafa922/hayat-meditron3-70b-clinical-v5"
MODEL_CACHE = "/app/hf_cache"
# Training hyperparameters
LORA_R = 16
LORA_ALPHA = 32
LORA_DROPOUT = 0.05
NUM_EPOCHS = 3
BATCH_SIZE = 1
GRADIENT_ACCUMULATION = 8
LEARNING_RATE = 2e-4
MAX_SEQ_LENGTH = 1024
WARMUP_RATIO = 0.03
HF_TOKEN = os.environ.get("HF_TOKEN", "")
# ========== HEALTH SERVER ==========
app = Flask(__name__)
training_status = {"stage": "initializing", "progress": 0, "message": "Starting up..."}
@app.route("/")
def health():
return jsonify(training_status)
def start_health_server():
app.run(host="0.0.0.0", port=7860, debug=False, use_reloader=False)
health_thread = threading.Thread(target=start_health_server, daemon=True)
health_thread.start()
print(f"[{datetime.now()}] Health server started on port 7860")
def get_disk_usage():
"""Get disk usage info for monitoring."""
total, used, free = shutil.disk_usage("/app")
return {
"total_gb": round(total / (1024**3), 1),
"used_gb": round(used / (1024**3), 1),
"free_gb": round(free / (1024**3), 1),
}
def clean_model_cache():
"""ERR-17 FIX: Delete all cached model shards to free disk space."""
cache_dirs = [
os.path.join(MODEL_CACHE, "hub"),
os.path.join(MODEL_CACHE, "models--OpenMeditron--Meditron3-70B"),
"/app/hf_cache/hub",
]
freed = 0
for cache_dir in cache_dirs:
if os.path.exists(cache_dir):
for root, dirs, files in os.walk(cache_dir):
for f in files:
if f.endswith(('.safetensors', '.bin', '.pt')):
fpath = os.path.join(root, f)
size = os.path.getsize(fpath)
os.remove(fpath)
freed += size
# Also clean any blob files (HF hub stores shards as blobs)
blob_pattern = os.path.join(MODEL_CACHE, "hub", "models--*", "blobs", "*")
for blob in glob.glob(blob_pattern):
try:
size = os.path.getsize(blob)
os.remove(blob)
freed += size
except:
pass
gc.collect()
return freed / (1024**3)
def check_gpu():
"""ERR-06: Uses total_memory not total_mem."""
if not torch.cuda.is_available():
raise RuntimeError("No CUDA GPU available!")
gpu_count = torch.cuda.device_count()
print(f"\n{'='*60}")
print(f"GPU REPORT")
print(f"{'='*60}")
for i in range(gpu_count):
props = torch.cuda.get_device_properties(i)
vram_gb = props.total_memory / (1024**3)
print(f" GPU {i}: {props.name} | {vram_gb:.1f} GB VRAM")
if gpu_count > 1:
print(f"\n WARNING: {gpu_count} GPUs detected — using GPU 0 ONLY (QLoRA + BnB = single GPU)")
primary_vram = torch.cuda.get_device_properties(0).total_memory / (1024**3)
if primary_vram < 70:
raise RuntimeError(f"GPU 0 has only {primary_vram:.1f}GB. Need >=80GB for 70B QLoRA.")
print(f"\n GPU 0 has {primary_vram:.1f}GB — sufficient for 70B QLoRA")
print(f"{'='*60}\n")
return primary_vram
# ========== ERR-17 FIX: DISK-SAFE MODEL LOADING ==========
def load_model_disk_safe():
"""
Load Meditron3-70B with aggressive disk management.
Strategy: Use low_cpu_mem_usage=True and let transformers handle shard-by-shard
loading. After model is fully loaded and quantized in GPU memory, immediately
delete ALL cached files from disk. This prevents the 135GB cache from filling
the ephemeral disk.
The key insight: once the model weights are in GPU memory (quantized to 4-bit),
the disk cache is no longer needed. We only need disk for the adapter output.
"""
from transformers import AutoModelForCausalLM, AutoTokenizer, BitsAndBytesConfig
disk = get_disk_usage()
print(f"[{datetime.now()}] Disk before download: {disk['used_gb']}GB used / {disk['free_gb']}GB free")
# Configure 4-bit quantization
bnb_config = BitsAndBytesConfig(
load_in_4bit=True,
bnb_4bit_quant_type="nf4",
bnb_4bit_compute_dtype=torch.bfloat16,
bnb_4bit_use_double_quant=True,
)
print(f"[{datetime.now()}] Downloading tokenizer (small, fast)...")
tokenizer = AutoTokenizer.from_pretrained(
MODEL_ID,
trust_remote_code=True,
token=HF_TOKEN,
cache_dir=MODEL_CACHE,
)
if tokenizer.pad_token is None:
tokenizer.pad_token = tokenizer.eos_token
tokenizer.pad_token_id = tokenizer.eos_token_id
print(f"[{datetime.now()}] Downloading and quantizing model shard-by-shard...")
print(f" NOTE: This downloads ~135GB but loads directly into GPU as 4-bit (~35GB)")
print(f" Disk will spike during download, then we clean up immediately after.")
# Load model — transformers downloads shards sequentially and can handle
# low disk if we set low_cpu_mem_usage=True (loads shard → GPU → next shard)
model = AutoModelForCausalLM.from_pretrained(
MODEL_ID,
quantization_config=bnb_config,
device_map={"": 0}, # ERR-11/12: Force single GPU
torch_dtype=torch.bfloat16,
trust_remote_code=True,
token=HF_TOKEN,
low_cpu_mem_usage=True, # Critical: minimize RAM/disk usage during load
cache_dir=MODEL_CACHE,
)
# Model is now in GPU memory (quantized). Delete ALL cached files from disk!
disk_before = get_disk_usage()
print(f"\n[{datetime.now()}] Model loaded into GPU. Disk: {disk_before['used_gb']}GB used")
print(f"[{datetime.now()}] ERR-17 FIX: Cleaning model cache from disk...")
freed_gb = clean_model_cache()
disk_after = get_disk_usage()
print(f" Freed {freed_gb:.1f}GB from disk cache")
print(f" Disk after cleanup: {disk_after['used_gb']}GB used / {disk_after['free_gb']}GB free")
# Log GPU memory
allocated = torch.cuda.memory_allocated(0) / (1024**3)
reserved = torch.cuda.memory_reserved(0) / (1024**3)
vram_gb = torch.cuda.get_device_properties(0).total_memory / (1024**3)
print(f" GPU VRAM: {allocated:.1f}GB allocated / {reserved:.1f}GB reserved / {vram_gb:.1f}GB total")
return model, tokenizer
# ========== MAIN TRAINING ==========
def main():
global training_status
start_time = time.time()
# Step 0: Authenticate
training_status = {"stage": "authenticating", "progress": 5, "message": "Logging into HuggingFace..."}
print(f"[{datetime.now()}] Authenticating with HuggingFace...")
if HF_TOKEN:
login(token=HF_TOKEN)
print(f" Authenticated with HF token")
else:
print(f" WARNING: No HF_TOKEN — gated model access may fail")
# Step 1: GPU Check
training_status = {"stage": "gpu_check", "progress": 10, "message": "Checking GPU..."}
vram_gb = check_gpu()
# Step 2: Disk-safe model loading (ERR-17 FIX)
training_status = {"stage": "loading_model", "progress": 15, "message": "Downloading & quantizing Meditron3-70B (disk-safe mode)..."}
model, tokenizer = load_model_disk_safe()
training_status = {"stage": "model_loaded", "progress": 40, "message": "Model loaded. Preparing QLoRA..."}
# Step 3: QLoRA setup
print(f"[{datetime.now()}] Preparing QLoRA adapter (r={LORA_R}, alpha={LORA_ALPHA})...")
from peft import LoraConfig, get_peft_model, prepare_model_for_kbit_training
model = prepare_model_for_kbit_training(model)
model.gradient_checkpointing_enable()
lora_config = LoraConfig(
r=LORA_R,
lora_alpha=LORA_ALPHA,
lora_dropout=LORA_DROPOUT,
bias="none",
task_type="CAUSAL_LM",
target_modules=["q_proj", "k_proj", "v_proj", "o_proj",
"gate_proj", "up_proj", "down_proj"],
)
model = get_peft_model(model, lora_config)
trainable_params = sum(p.numel() for p in model.parameters() if p.requires_grad)
total_params = sum(p.numel() for p in model.parameters())
print(f" Trainable: {trainable_params:,} / {total_params:,} ({100*trainable_params/total_params:.2f}%)")
# Step 4: Load dataset
training_status = {"stage": "loading_data", "progress": 45, "message": "Loading 840-example dataset..."}
print(f"[{datetime.now()}] Loading dataset from {DATASET_PATH}...")
from datasets import Dataset
examples = []
with open(DATASET_PATH) as f:
for line in f:
d = json.loads(line)
text = tokenizer.apply_chat_template(d["messages"], tokenize=False, add_generation_prompt=False)
examples.append({"text": text})
dataset = Dataset.from_list(examples)
print(f" Loaded {len(dataset)} examples")
# Final disk check before training
disk = get_disk_usage()
print(f" Disk before training: {disk['used_gb']}GB used / {disk['free_gb']}GB free")
# Step 5: Training
training_status = {"stage": "training", "progress": 50, "message": "Training started (3 epochs, 840 examples)..."}
print(f"\n[{datetime.now()}] Starting training...")
print(f" epochs={NUM_EPOCHS}, batch={BATCH_SIZE}, grad_accum={GRADIENT_ACCUMULATION}")
print(f" effective_batch={BATCH_SIZE * GRADIENT_ACCUMULATION}, lr={LEARNING_RATE}")
print(f" max_seq_length={MAX_SEQ_LENGTH}")
from transformers import TrainingArguments
from trl import SFTTrainer # ERR-09: trl==0.9.6 API
training_args = TrainingArguments(
output_dir=OUTPUT_DIR,
num_train_epochs=NUM_EPOCHS,
per_device_train_batch_size=BATCH_SIZE,
gradient_accumulation_steps=GRADIENT_ACCUMULATION,
learning_rate=LEARNING_RATE,
warmup_ratio=WARMUP_RATIO,
optim="paged_adamw_8bit", # ERR-15: 8-bit optimizer
fp16=False,
bf16=True,
logging_steps=5,
save_strategy="epoch",
save_total_limit=2,
gradient_checkpointing=True, # ERR-15: saves ~40% VRAM
gradient_checkpointing_kwargs={"use_reentrant": False},
report_to="none",
max_grad_norm=0.3,
lr_scheduler_type="cosine",
seed=42,
)
# ERR-09: trl==0.9.6 — params in SFTTrainer constructor
trainer = SFTTrainer(
model=model,
args=training_args,
train_dataset=dataset,
tokenizer=tokenizer,
max_seq_length=MAX_SEQ_LENGTH,
dataset_text_field="text",
packing=False,
)
# Progress callback
class StatusCallback:
def on_log(self, args, state, control, logs=None, **kwargs):
global training_status
if state.global_step > 0 and logs:
progress = min(95, 50 + int(45 * state.global_step / state.max_steps))
loss = logs.get("loss", "N/A")
training_status = {
"stage": "training",
"progress": progress,
"message": f"Step {state.global_step}/{state.max_steps} | Loss: {loss}",
}
print(f" Step {state.global_step}/{state.max_steps} | Loss: {loss}")
trainer.add_callback(StatusCallback())
# TRAIN
train_result = trainer.train()
train_time = time.time() - start_time
print(f"\n[{datetime.now()}] Training complete!")
print(f" Time: {train_time/60:.1f} minutes | Loss: {train_result.training_loss:.4f}")
# Step 6: Save adapter
training_status = {"stage": "saving", "progress": 96, "message": "Saving adapter files..."}
print(f"[{datetime.now()}] Saving adapter...")
# Clean up checkpoint dirs to save disk before final save
for d in glob.glob(os.path.join(OUTPUT_DIR, "checkpoint-*")):
shutil.rmtree(d, ignore_errors=True)
trainer.save_model(OUTPUT_DIR)
tokenizer.save_pretrained(OUTPUT_DIR)
summary = {
"model_id": MODEL_ID,
"adapter_repo": ADAPTER_REPO,
"dataset_size": len(dataset),
"training_time_minutes": round(train_time / 60, 1),
"final_loss": round(train_result.training_loss, 4),
"epochs": NUM_EPOCHS,
"lora_r": LORA_R,
"lora_alpha": LORA_ALPHA,
"learning_rate": LEARNING_RATE,
"max_seq_length": MAX_SEQ_LENGTH,
"batch_size": BATCH_SIZE,
"gradient_accumulation": GRADIENT_ACCUMULATION,
"effective_batch_size": BATCH_SIZE * GRADIENT_ACCUMULATION,
"optimizer": "paged_adamw_8bit",
"gpu": torch.cuda.get_device_name(0),
"vram_gb": round(vram_gb, 1),
"version": "V5.1-840ex-compliance-fix",
"timestamp": datetime.now().isoformat(),
"compliance_fix": "Added 20 compliance trap examples (Q24/Q37 Arabic greeting fix)",
"disk_management": "ERR-17 fix: shard cleanup after GPU load",
}
with open(os.path.join(OUTPUT_DIR, "training_summary.json"), "w") as f:
json.dump(summary, f, indent=2)
# Step 7: Upload to HuggingFace Hub
training_status = {"stage": "uploading", "progress": 97, "message": "Uploading adapter to HuggingFace Hub..."}
print(f"[{datetime.now()}] Uploading adapter to {ADAPTER_REPO}...")
api = HfApi()
try:
api.create_repo(repo_id=ADAPTER_REPO, exist_ok=True, token=HF_TOKEN)
api.upload_folder(
folder_path=OUTPUT_DIR,
repo_id=ADAPTER_REPO,
token=HF_TOKEN,
commit_message=f"V5.1 retrain: 840ex + compliance fix + ERR-17 disk-safe",
)
print(f" Uploaded to https://huggingface.co/{ADAPTER_REPO}")
except Exception as e:
print(f" Upload error: {e}")
print(f" Adapter saved locally at {OUTPUT_DIR}")
# List output files
print(f"\n{'='*60}")
print(f"OUTPUT FILES")
print(f"{'='*60}")
for f in sorted(os.listdir(OUTPUT_DIR)):
fpath = os.path.join(OUTPUT_DIR, f)
if os.path.isfile(fpath):
size_mb = os.path.getsize(fpath) / (1024**1024)
print(f" {f}: {size_mb:.1f} MB")
disk = get_disk_usage()
print(f"\nFinal disk: {disk['used_gb']}GB used / {disk['free_gb']}GB free")
# Done
training_status = {
"stage": "completed",
"progress": 100,
"message": f"DONE! Loss: {train_result.training_loss:.4f} | {train_time/60:.1f}min | 840 examples",
"summary": summary,
}
print(f"\n{'='*60}")
print(f"TRAINING COMPLETE")
print(f" Dataset: {len(dataset)} examples (820 + 20 compliance fixes)")
print(f" Final loss: {train_result.training_loss:.4f}")
print(f" Time: {train_time/60:.1f} minutes")
print(f" Adapter: https://huggingface.co/{ADAPTER_REPO}")
print(f"{'='*60}")
# Keep alive 10 min for log reading
print(f"\n[{datetime.now()}] Keeping alive 10 min for log access...")
print(f" >>> PAUSE THIS SPACE after downloading adapter! <<<")
time.sleep(600)
print(f"[{datetime.now()}] Auto-exit.")
if __name__ == "__main__":
main()