| --- |
| license: other |
| task_categories: |
| - text-generation |
| - graph-ml |
| - feature-extraction |
| language: |
| - en |
| pretty_name: UniProt Forest-of-Thought Graphification for ToricGT |
| --- |
| |
| # UniProt Forest-of-Thought Graphification for ToricGT |
|
|
| This repository stores Parquet-first biological graph/FoT curation artifacts for ToricGT. |
| The current upload is an initial deterministic graphification sample, not the final authored reasoning corpus. |
|
|
| Raw upstream Parquet data is not uploaded in this initial push. Local raw sources remain organized by symlink under the ToricGT data tree and require separate license review before redistribution. |
|
|
| ## Files |
|
|
| - `derived/uniprot_fot_graphified_sample.parquet` |
| - `manifests/uniprot_fot_build_manifest.json` |
| - `schema/uniprot_fot_record.schema.json` |
| - `LOCAL_README.md` |
| - `GOAL.md` |
|
|
| ## Current Local Build |
|
|
| - Repository: `AmelieSchreiber/uniprot_fot` |
| - Derived sample records: `48` |
| - Raw datasets scanned: `6` |
| - Raw Parquet files scanned: `168` |
| - Readable raw Parquet files: `167` |
| - Raw rows indexed in manifest: `99138803` |
|
|
| ## Format |
|
|
| Each row contains flat loader columns plus `graph_json`, `forest_json`, `metadata_json`, hashes, split cluster metadata, and quality flags. Graph JSON records include directed nodes/edges, GFlowNet reward metadata, continuous embedding proxies, TokenGT/TropicalGT/ToricGT fields, active support nodes, and leakage-resistant split metadata. |
|
|
| ## Safety And License Notes |
|
|
| Biomedical content is for model-training curation and mechanism-focused annotation reasoning, not patient-specific medical advice. Source licenses and redistribution rights must be reviewed before uploading larger raw-derived corpora. |
|
|
