README.md

metadata

title: Regulatory Signal
emoji: 🧬
colorFrom: blue
colorTo: indigo
sdk: gradio
sdk_version: 6.14.0
python_version: '3.13'
app_file: app.py
pinned: false
license: agpl-3.0
suggested_hardware: t4-small
models:
  - multimolecule/enformer
  - multimolecule/basenji
  - multimolecule/bpnet
  - multimolecule/chrombpnet
  - multimolecule/procapnet
tags:
  - biology
  - dna
  - regulatory-genomics
  - regulatory-signal
  - multimolecule

Interactive regulatory signal scoring with MultiMolecule.

Choose track output for binned Enformer/Basenji-style genomic coverage tracks, or profile output for base-resolution BPNet-style signal profiles. Enter one DNA sequence or upload a single-record FASTA file, then inspect the signal table, run metadata, CSV/JSON downloads, and a Matplotlib line plot.

This Space intentionally stays sequence-relative: output bins and positions are plotted without genome-coordinate browser scope. IGV.js, Gosling, and pyGenomeTracks are better future options for coordinate-aware tracks once genomic intervals, references, and track metadata are part of the app.